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BaseInfo

ncRNA ID	novel_gra_miR231
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:52177360-52177550 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAAGGACUAGUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	--                  --AUUC           UA C   U                  UUCUUA  -    AA AUGAGGUACAUGCGGCAUACU   UCAAAGAGCAAAUUGGUU      GUUGAAAAUUU  U CAU UUUACUGUUAAAAAUUGG      UA UGUU  C                     U   ||||||||||||||||||      |||||||||||  | ||| ||||||||||||||||||      || ||||  |   AGUUUCUCGUUUGAUCAG      CAAUUUUUAAA  A GUA AGAUGAUAAUUUUUGAUU      AC GGCU  A                     U CU                  GAAAAA           GC A   C                  ----GU  U    -- UCUUAUUGGUUUGUUACUCUA
Stem-loop sequence	UCAAAGAGCAAAUUGGUUAUUCGUUGAAAAUUUUAUCCAUUUUUACUGUUAAAAAUUGGUUCUUAUAUGUUAACAUGAGGUACAUGCGGCAUACUUUAUCUCAUUGUUUGGUUAUUCUAUCGGUCAUGUUAGUUUUUAAUAGUAGACAUGAACGAAAUUUUUAACAAAAAGGACUAGUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012605166.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *|||||||||||||||=||||||| targets:1262   AAUCAAAGAGCAAACUGGUCCUUU   1285 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012605165.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *|||||||||||||||=||||||| targets:1322   AAUCAAAGAGCAAACUGGUCCUUU   1345 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012625869.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *||||||||*||||||=||||||| targets:1211   AAUCAAAGAACAAACUGGUCCUUU   1234 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012613783.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   |||=||||||||||||||||*||* targets:1542   GAUUAAAGAGCAAACUAGUCAUUC   1565 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine acetyltransferase 4-like (LOC105787406), mRNA	serine acetyltransferase 4-like(LOC105787406)	coding protein	psRNATarget
XM_012624805.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   |||*|||||*||||||||||*||| targets:1594   GAUAAAAGAACAAACUAGUCAUUU   1617 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable carboxylesterase 7 (LOC105795259), transcript variant X2, mRNA	probable carboxylesterase 7(LOC105795259)	coding protein	psRNATarget