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BaseInfo

ncRNA ID	novel_gra_miR229
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:57667966-57668030 [-]
Reference genome	Graimondii2_0
Source	SRR616255
Length	21
Mature sequence(if miRNA)	1 - UUGCUGAUUUUUUGAGCAGGC - 21
Stem-loop(if miRNA)	--  -A      UU       U      U    U   CU  UUAAAA  AAUCAGU AAUAUU GUAA U   ||  ||||||  ||||||| |||||| ||||   GA  AGUUUU  UUAGUCG UUAUAA CAUU U CG  CG      --       U      U    A
Stem-loop sequence	CUAUUAAAAUUAAUCAGUUAAUAUUUGUAAUUUAUUACUAAUAUUUGCUGAUUUUUUGAGCAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012632982.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:482   CUCUGACUUAAAAAAUCAGCAA   503 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X6, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget
XM_012632978.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:427   CUCUGACUUAAAAAAUCAGCAA   448 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X2, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget
XM_012632981.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:480   CUCUGACUUAAAAAAUCAGCAA   501 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X5, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget
XM_012632980.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:479   CUCUGACUUAAAAAAUCAGCAA   500 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X4, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget
XM_012632977.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:480   CUCUGACUUAAAAAAUCAGCAA   501 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X1, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget
XM_012632979.1	ncRNA:21   CGGAC-GAGUUUUUUAGUCGUU   1   *=|||-||=||||||||||||| targets:492   CUCUGACUUAAAAAAUCAGCAA   513 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-4-like (LOC105801727), transcript variant X3, mRNA	kinesin-4-like(LOC105801727)	coding protein	psRNATarget