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BaseInfo

ncRNA ID	novel_gra_miR225
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:52187978-52188169 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	24
Mature sequence(if miRNA)	169 - GAAUGACCAGUUUGUUCUUUGAUC - 192
Stem-loop(if miRNA)	--     A        A   CU              G   C   A    C           A - G    -  A      AACUAAACAAUUACAC      UGC   UUAAA AGCAAAUU GUC  UUCUAUUAAAAAUU CAU CAU UCUA AGUUAAAAAUU G C UUGC UG CAAAAU                GAGGCG   C   ||||| |||||||| |||  |||||||||||||| ||| ||| |||| ||||||||||| | | |||| || ||||||                ||||||   A   AGUUU UUGUUUGA CAG  AAGAUAAUUUUUAA GUA GUA AGAU UUAAUUUUUAA C G AACG AC GUUUUA                CUCCGU   C CU     C        C   -U              A   A   A    A           C A G    U  A      ----------------      GUA
Stem-loop sequence	UUAAAAAGCAAAUUAGUCCUUUCUAUUAAAAAUUGCAUCCAUAUCUACAGUUAAAAAUUAGCGUUGCUGACAAAAUAACUAAACAAUUACACGAGGCGUGCCACAUGUGCCUCAUUUUGACAUGCAAGGACCAAUUUUUAAUUAUAGAAAUGAAUGAAAUUUUUAAUAGAAUGACCAGUUUGUUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625097.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   |||||||||=||||*||||||||| targets:1095   GAUCAAAGAGCAAAAUGGUCAUUC   1118 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii partner of Y14 and mago-like (LOC105795464), mRNA	partner of Y14 and mago-like(LOC105795464)	coding protein	psRNATarget
XM_012613878.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   |||||||||=||||||||*||||| targets:1128   GAUCAAAGAGCAAACUGGCCAUUC   1151 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787451 (LOC105787451), mRNA	uncharacterized LOC105787451(LOC105787451)	coding protein	psRNATarget
XM_012613783.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   |||=|||||=||||||*||||||| targets:1542   GAUUAAAGAGCAAACUAGUCAUUC   1565 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine acetyltransferase 4-like (LOC105787406), mRNA	serine acetyltransferase 4-like(LOC105787406)	coding protein	psRNATarget
XM_012625869.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   *|||||||||||||||||||*||= targets:1211   AAUCAAAGAACAAACUGGUCCUUU   1234 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012625918.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   *||=|||||=||||||||||*||| targets:1740   AAUUAAAGAGCAAACUGGUCUUUC   1763 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cytochrome P450 71D10-like (LOC105796302), mRNA	cytochrome P450 71D10-like(LOC105796302)	coding protein	psRNATarget
XM_012624805.1	ncRNA:24   CUAGUUUCUUGUUUGACCAGUAAG   1   |||*||||||||||||*||||||= targets:1594   GAUAAAAGAACAAACUAGUCAUUU   1617 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable carboxylesterase 7 (LOC105795259), transcript variant X2, mRNA	probable carboxylesterase 7(LOC105795259)	coding protein	psRNATarget