ncRNA ID | novel_gra_miR203 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr6:6562315-6562397 [-] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 21 |
Mature sequence(if miRNA) | 63 - UCUGUCGCAGGGGAGAUGGCU - 83 |
Stem-loop(if miRNA) |
--    U   A  G            C   U    CCUAU     UCUG CGC GG GAGAUGGCUGGU CAU CAUG     GCU   |||| ||| || |||||||||||| ||| ||||     ||A   AGAC GCG CC CUCUACCGACUA GUA GUAU     CGU CA    C   -  A            C   U    -UAAC   |
Stem-loop sequence | UCUGUCGCAGGGGAGAUGGCUGGUCCAUUCAUGCCUAUGCUAUGCCAAUUAUGUAUGCAUCAGCCAUCUCACCGCGCCAGAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012599970.1 |
|
2.5 | PREDICTED: Gossypium raimondii calcium-transporting ATPase 9, plasma membrane-type-like (LOC105776976), transcript variant X2, mRNA | calcium-transporting ATPase 9, plasma membrane-type-like(LOC105776976) | coding protein | psRNATarget | |||||||||
XM_012599969.1 |
|
2.5 | PREDICTED: Gossypium raimondii calcium-transporting ATPase 9, plasma membrane-type-like (LOC105776976), transcript variant X1, mRNA | calcium-transporting ATPase 9, plasma membrane-type-like(LOC105776976) | coding protein | psRNATarget |