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BaseInfo

ncRNA ID novel_gra_miR203
Species Gossypium raimondii
Class miRNA
Genome position Chr6:6562315-6562397 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 21
Mature sequence(if miRNA) 63 - UCUGUCGCAGGGGAGAUGGCU - 83
Stem-loop(if miRNA) --    U   A  G            C   U    CCUAU  
  UCUG CGC GG GAGAUGGCUGGU CAU CAUG     GCU
  |||| ||| || |||||||||||| ||| ||||     ||A
  AGAC GCG CC CUCUACCGACUA GUA GUAU     CGU
CA    C   -  A            C   U    -UAAC  
Stem-loop sequence UCUGUCGCAGGGGAGAUGGCUGGUCCAUUCAUGCCUAUGCUAUGCCAAUUAUGUAUGCAUCAGCCAUCUCACCGCGCCAGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012599970.1
ncRNA:21   UCGGUAGAGGGGACGCUGUCU   1
  |||||||||||=||||||||*
targets:221   AGCCAUCUCCCUUGCGACAGU   241

2.5 PREDICTED: Gossypium raimondii calcium-transporting ATPase 9, plasma membrane-type-like (LOC105776976), transcript variant X2, mRNA calcium-transporting ATPase 9, plasma membrane-type-like(LOC105776976) coding protein psRNATarget
XM_012599969.1
ncRNA:21   UCGGUAGAGGGGACGCUGUCU   1
  |||||||||||=||||||||*
targets:291   AGCCAUCUCCCUUGCGACAGU   311

2.5 PREDICTED: Gossypium raimondii calcium-transporting ATPase 9, plasma membrane-type-like (LOC105776976), transcript variant X1, mRNA calcium-transporting ATPase 9, plasma membrane-type-like(LOC105776976) coding protein psRNATarget