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BaseInfo

ncRNA ID novel_gra_miR200
Species Gossypium raimondii
Class miRNA
Genome position Chr6:8345035-8345122 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 24
Mature sequence(if miRNA) 1 - UAGCAACUGGACAUCCAAGUUGGC - 24
Stem-loop(if miRNA) --              UAU  G  -AGUCCA    AAAUUUAUUU
  CAACUUGGAUGUCU   GU GC       AAUU          A
  ||||||||||||||   || ||       ||||          A
  GUUGAACCUACAGG   CA CG       UUUU          U
CG              --U  A  AUCUUAC    AUACAAAAAU
Stem-loop sequence CAACUUGGAUGUCUUAUGUGGCAGUCCAAAUUAAAUUUAUUUAAUUAAAAACAUAUUUUCAUUCUAGCAACUGGACAUCCAAGUUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012600821.1
ncRNA:24   CGGUUGAACCUACAGGUCAACGAU   1
  ||||**||||*||||||||||||=
targets:1640   GCCAUGUUGGUUGUCCAGUUGCUG   1663

3.0 PREDICTED: Gossypium raimondii uncharacterized LOC105777504 (LOC105777504), mRNA uncharacterized LOC105777504(LOC105777504) coding protein psRNATarget