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BaseInfo

ncRNA ID	novel_gra_miR190
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr8:49501242-49501340 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	21
Mature sequence(if miRNA)	1 - UAGCCAAGGAUGACUUGCCUA - 21
Stem-loop(if miRNA)	--         AU    U     AACC        ----    A         U   UAGCCAAGG  GACU GCCUA    CAAACUAG    AGGA UGUUAUAUA G   |||||||||  |||| |||||    ||||||||    |||| |||||||||   AUCGGUUUC  CUGA CGGAU    GUUUGGUC    UCCU AUAAUAUAU U CU         CU    -     ----        AUUU    A         A
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUAAACCCAAACUAGAGGAAUGUUAUAUAUGUAUAUAUAAUAAUCCUUUUACUGGUUUGUAGGCAGUCUCCUUUGGCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012629760.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   ||||||||||||||||||||| targets:1864   UAGGCAAGUCAUCCUUGGCUA   1884 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii ERAD-associated E3 ubiquitin-protein ligase HRD1B-like (LOC105799293), transcript variant X2, mRNA	ERAD-associated E3 ubiquitin-protein ligase HRD1B-like(LOC105799293)	coding protein	psRNATarget
XM_012623738.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1167   UCGGCAACUCAUCCUUGGCUU   1187 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012594690.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1202   UCGGCAACUCAUCCUUGGCUU   1222 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-3-like (LOC105773066), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC105773066)	coding protein	psRNATarget
XM_012624029.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1276   UCGGCAACUCAUCCUUGGCUU   1296 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012594688.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1265   UCGGCAACUCAUCCUUGGCUU   1285 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-3-like (LOC105773066), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC105773066)	coding protein	psRNATarget
XM_012594685.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1271   UCGGCAACUCAUCCUUGGCUU   1291 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-3-like (LOC105773066), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC105773066)	coding protein	psRNATarget
XM_012623963.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1365   UCGGCAACUCAUCCUUGGCUU   1385 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012594687.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1354   UCGGCAACUCAUCCUUGGCUU   1374 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-3-like (LOC105773066), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC105773066)	coding protein	psRNATarget
XM_012594686.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1430   UCGGCAACUCAUCCUUGGCUU   1450 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-3-like (LOC105773066), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC105773066)	coding protein	psRNATarget
XM_012623889.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1485   UCGGCAACUCAUCCUUGGCUU   1505 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012623817.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1946   UCGGCAACUCAUCCUUGGCUU   1966 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012624102.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:2190   UCGGCAACUCAUCCUUGGCUU   2210 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012623666.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:2195   UCGGCAACUCAUCCUUGGCUU   2215 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-5-like (LOC105794462), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC105794462)	coding protein	psRNATarget
XM_012609707.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1137   CCGGCAACUCAUCCUUGGCUU   1157 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609709.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1138   CCGGCAACUCAUCCUUGGCUU   1158 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609708.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1151   CCGGCAACUCAUCCUUGGCUU   1171 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609706.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1154   CCGGCAACUCAUCCUUGGCUU   1174 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012618940.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   *|*||*||||||||||||||= targets:1062   CACGCUAGUCAUCCUUGGCUG   1082 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105791062 (LOC105791062), mRNA	uncharacterized LOC105791062(LOC105791062)	coding protein	psRNATarget