ncRNA ID | novel_gra_miR189 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr6:46053201-46053418 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 195 - AUACACGUGGGCUGCUACGUCUGC - 218 |
Stem-loop(if miRNA) |
--U   A  A  A           AC  C  C    U          UUUAAAAAA     ---     UAGAAUAUUAUUAUAAAUUUAUUAUUAAAUCAAUUUUAUUUUUU    GAC UG CA UUUACGUGUAU  CA GU AACA UUAAUUAAUU         UUAAA   AAAUA                                            U    ||| || || |||||||||||  || || |||| ||||||||||         |||||   |||||    CUG AU GU GGGUGCACAUA  GU UA UUGU AAUUAAUUAA         AAAAU   UAAGG                                            G CGU   C  C  C           CA  U  U    U          -----UUUU     UUU     UUUUUUAUUCUUAUAUAUUUUUAUAAAUUUUUUGUAUUUUUAAU |
Stem-loop sequence | UGACAUGACAAUUUACGUGUAUACCACGUCAACAUUUAAUUAAUUUUUAAAAAAUUAAAAAAUAUAGAAUAUUAUUAUAAAUUUAUUAUUAAAUCAAUUUUAUUUUUUUGUAAUUUUUAUGUUUUUUAAAUAUUUUUAUAUAUUCUUAUUUUUUGGAAUUUUUAAAAUUUUAAUUAAUUAAUUGUUUAUUUGACAUACACGUGGGCUGCUACGUCUGC |