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BaseInfo

ncRNA ID novel_gra_miR189
Species Gossypium raimondii
Class miRNA
Genome position Chr6:46053201-46053418 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 195 - AUACACGUGGGCUGCUACGUCUGC - 218
Stem-loop(if miRNA) --U   A  A  A           AC  C  C    U          UUUAAAAAA     ---     UAGAAUAUUAUUAUAAAUUUAUUAUUAAAUCAAUUUUAUUUUUU
   GAC UG CA UUUACGUGUAU  CA GU AACA UUAAUUAAUU         UUAAA   AAAUA                                            U
   ||| || || |||||||||||  || || |||| ||||||||||         |||||   |||||
   CUG AU GU GGGUGCACAUA  GU UA UUGU AAUUAAUUAA         AAAAU   UAAGG                                            G
CGU   C  C  C           CA  U  U    U          -----UUUU     UUU     UUUUUUAUUCUUAUAUAUUUUUAUAAAUUUUUUGUAUUUUUAAU
Stem-loop sequence UGACAUGACAAUUUACGUGUAUACCACGUCAACAUUUAAUUAAUUUUUAAAAAAUUAAAAAAUAUAGAAUAUUAUUAUAAAUUUAUUAUUAAAUCAAUUUUAUUUUUUUGUAAUUUUUAUGUUUUUUAAAUAUUUUUAUAUAUUCUUAUUUUUUGGAAUUUUUAAAAUUUUAAUUAAUUAAUUGUUUAUUUGACAUACACGUGGGCUGCUACGUCUGC