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BaseInfo

ncRNA ID novel_gra_miR188
Species Gossypium raimondii
Class miRNA
Genome position Chr6:44875600-44875786 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 164 - ACGGAGCUUAACGGUAAAGUGACC - 187
Stem-loop(if miRNA) --               A   UA            C ACA  C     C            -      --UA   -GCC      --GA    -  A
  UCACUUUACCGUUAA CUC  UUACCUCCCUAA G   GU CUACG GGCAGUCUAAAU AGGUUU    AAU    AACUUA    UGUC CA U
  ||||||||||||||| |||  |||||||||||| |   || ||||| |||||||||||| ||||||    |||    ||||||    |||| || U
  AGUGAAAUGGCAAUU GAG  AAUGGAGGGAUU C   CA GAUGC CCGUUAGGUUUA UUUAAA    UUA    UUGGAU    GUAG GU G
CC               C   GC            A -CG  A     A            A      UAAA   AUUU      AAAA    A  A
Stem-loop sequence UCACUUUACCGUUAAACUCUAUUACCUCCCUAACGACAGUCCUACGCGGCAGUCUAAAUAGGUUUUAAAUGCCAACUUAGAUGUCCAAUUGAUGAGAUGAAAAUAGGUUUUUAAUUAAAUAAAUUUAAUUUGGAUUGCCACGUAGAACGCCAUUAGGGAGGUAACGGAGCUUAACGGUAAAGUGACC