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BaseInfo

ncRNA ID novel_gra_miR175
Species Gossypium raimondii
Class miRNA
Genome position Chr5:15173902-15174101 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 177 - AUGGAACUGUGGUUCUACGUCAUU - 200
Stem-loop(if miRNA) --              C  C   A  C    C C            -      C      A      C  -C           CU     CUCG  AAAAA
  AUGGAACUGUGGUU UA GUC UU UUAU C UUUCUAAUAGGA GAAUGA AAAUCA AUUUUU CU  UUGAUUUUUAG  UUUUC    UG     U
  |||||||||||||| || ||| || |||| | |||||||||||| |||||| |||||| |||||| ||  |||||||||||  |||||    ||     U
  UACUUUGACAUUAA AU CAG AA AAUA G AAAGAUUAUCUU CUUACU UUUAGU UAAAAA GA  GAUUAAAAAUU  AAAAG    AC     C
UA              A  A   A  A    A A            U      A      C      A  AA           AU     -UCA  CUAAA
Stem-loop sequence AUGGAACUGUGGUUCUACGUCAUUCUUAUCCCUUUCUAAUAGGAGAAUGACAAAUCAAAUUUUUCCUCUUGAUUUUUAGCUUUUUCCUCGUGAAAAAUUCAAAUCCAACUGAAAAUAUUAAAAAUUAGAAAGAAAAAAUCUGAUUUAUCAUUCUUUCUAUUAGAAAAGAAUAAAAAAGACAUAAAAUUACAGUUUCAUAU