Search result

BaseInfo

ncRNA ID	novel_gra_miR173
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:729587-729736 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAGGAUCAAUUUGCUCUUUGAUCU - 24
Stem-loop(if miRNA)	--AUA   A       A         U       AUAACUAGAUAGUGACACG   U  G -  CAUGAACCUCAUGGUUAUGUAC      AAA AGCAAAU GGUCCUUUU GUUAAAA                   UUG GU C CA                      A      ||| ||||||| ||||||||| |||||||                   ||| || | ||      UUU UCGUUUA CUAGGAAGA CAAUUUU                   AAG GU A GU                      G UCUAG   C       A         -       ------------------A   -  - G  AAAGAUGAUAUUUUAAACCAGG
Stem-loop sequence	AUAAAAAAGCAAAUAGGUCCUUUUUGUUAAAAAUAACUAGAUAGUGACACGUUGUGUGCCACAUGAACCUCAUGGUUAUGUACAGGGACCAAAUUUUAUAGUAGAAAUGGAUGGAAAUUUUAACAGAAGGAUCAAUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012603439.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   |*|||||||||||||||||||||| targets:1611   AAAUCAAAGAGCAAAUUGAUCCUU   1634 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii vinorine synthase-like (LOC105779614), mRNA	vinorine synthase-like(LOC105779614)	coding protein	psRNATarget
XM_012633992.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1171   AGUUCAAAGAGCAAAUUGGUCCUU   1194 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1223   AGUUCAAAGAGCAAAUUGGUCCUU   1246 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1227   AGUUCAAAGAGCAAAUUGGUCCUU   1250 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||*|||||||||||||||=||||| targets:1291   AGUUCAAAGAGCAAAUUGGUCCUU   1314 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012628156.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2231   AGAUUAAAGAGAAAAUUGAUCCUU   2254 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X3, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628155.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2296   AGAUUAAAGAGAAAAUUGAUCCUU   2319 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X2, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012628154.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=||||||*|||||||||||| targets:2307   AGAUUAAAGAGAAAAUUGAUCCUU   2330 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii beta-1,3-galactosyltransferase 15-like (LOC105798183), transcript variant X1, mRNA	beta-1,3-galactosyltransferase 15-like(LOC105798183)	coding protein	psRNATarget
XM_012603731.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   *|*||||||||||*|||||||||| targets:1602   UGUUCAAAGAGCACAUUGAUCCUU   1625 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii prolyl 3-hydroxylase 2 (LOC105779800), transcript variant X2, mRNA	prolyl 3-hydroxylase 2(LOC105779800)	coding protein	psRNATarget
XM_012611743.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   |*||||*|||*||||||||||||| targets:1807   AUAUCACAGAACAAAUUGAUCCUU   1830 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii calcium-binding mitochondrial carrier protein SCaMC-2-B-like (LOC105785626), mRNA	calcium-binding mitochondrial carrier protein SCaMC-2-B-like(LOC105785626)	coding protein	psRNATarget
XM_012600317.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=|||*||=|||||||||||| targets:807   AGAUUAAAAAGUAAAUUGAUCCUU   830 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X2, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget
XM_012600316.1	ncRNA:24   UCUAGUUUCUCGUUUAACUAGGAA   1   ||||=|||*||=|||||||||||| targets:945   AGAUUAAAAAGUAAAUUGAUCCUU   968 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105777200 (LOC105777200), transcript variant X1, mRNA	uncharacterized LOC105777200(LOC105777200)	coding protein	psRNATarget