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BaseInfo

ncRNA ID novel_gra_miR171
Species Gossypium raimondii
Class miRNA
Genome position Chr5:55232963-55233078 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - AAAGGUCGUGAUCUUUAGCGGCGU - 24
Stem-loop(if miRNA) --                                GUG  -AA               UC
  GCCGCUAAAGGUCAUGAUCUUUAGCGGCGUUU   AU   AAGCGCCGCUAAAGG  A
  ||||||||||||||||||||||||||||||||   ||   |||||||||||||||
  CGGCGAUUUCUAGUGCUGGAAAUCGCUGCGAA   UA   UUUGCGGCGAUUUCU  U
UG                                -AA  GUG               UG
Stem-loop sequence GCCGCUAAAGGUCAUGAUCUUUAGCGGCGUUUGUGAUAAAAGCGCCGCUAAAGGUCAUGUUCUUUAGCGGCGUUUGUGAUAAAAGCGUCGCUAAAGGUCGUGAUCUUUAGCGGCGU