| ncRNA ID | novel_gra_miR170 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | Chr5:58735088-58735250 [-] |
| Reference genome | Graimondii2_0 |
| Source | SRR616255;SRR616257 |
| Length | 24 |
| Mature sequence(if miRNA) | 140 - UAGCACAUGGGCAUGUGACUUGGC - 163 |
| Stem-loop(if miRNA) |
----UA GCA A UG - GAC C A --- AAA AAAUU C C U G G GCACAUGG UGUG CU GCU AUGU CC UGC CC UAAUUUUC AAUU GUC ACA GGCC A CACAC A |||||||| |||| || ||| |||| || ||| || |||||||| |||| ||| ||| |||| | ||||| CGUGUGCC GCAC GG CGG UACA GG ACG GG AUUGAGAG UUGA CAG UGU CCGG U GUGUG G ACAUUC --A A GU G --- U - CAC --A --ACC - A U G C |
| Stem-loop sequence | UAGCACAUGGGCAUGUGACUUGGCUAUGUGACCCCUGCACCUAAUUUUCAAAAAUUAAAUUGUCCACACGGCCUAGCACACGAGCGUGUGGUUGGCCAUGUGACCCAAGUUAGAGAGUUACACGGGCAUGGACAUGGGCUGGGACACGACCGUGUGCCUUACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012616229.1 |
|
1.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105789031 (LOC105789031), transcript variant X2, mRNA | uncharacterized LOC105789031(LOC105789031) | coding protein | psRNATarget | |||||||||
| XM_012616228.1 |
|
1.5 | PREDICTED: Gossypium raimondii uncharacterized LOC105789031 (LOC105789031), transcript variant X1, mRNA | uncharacterized LOC105789031(LOC105789031) | coding protein | psRNATarget |