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BaseInfo

ncRNA ID novel_gra_miR166
Species Gossypium raimondii
Class miRNA
Genome position Chr5:50291187-50291286 [+]
Reference genome Graimondii2_0
Source SRR616255;SRR616256
Length 24
Mature sequence(if miRNA) 77 - AAAGCGCUCUGACGUGGACGCGAU - 100
Stem-loop(if miRNA) --                      A         AC          -  U
  CGCGUCCAUGUCAGAGCGCUUU CUGACGUGG  ACAAAUCGCG CU A
  |||||||||||||||||||||| |||||||||  |||||||||| || C
  GCGCAGGUGCAGUCUCGCGAAA GACUGCACC  UGUUUAGCGC GG G
UA                      C         GU          A  U
Stem-loop sequence CGCGUCCAUGUCAGAGCGCUUUACUGACGUGGACACAAAUCGCGCUUACGUGGACGCGAUUUGUUGCCACGUCAGCAAAGCGCUCUGACGUGGACGCGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012622070.1
ncRNA:24   UAGCGCAGGUGCAGUCUCGCGAAA   1
  ||||||||||||||||*||||||*
targets:1130   AUCGCGUCCACGUCAGCGCGCUUA   1153

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105793143 (LOC105793143), mRNA uncharacterized LOC105793143(LOC105793143) coding protein psRNATarget