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BaseInfo

ncRNA ID novel_gra_miR165
Species Gossypium raimondii
Class miRNA
Genome position Chr5:45663896-45663951 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - AGUUGAUGUGGCAAGUUAACUGCU - 24
Stem-loop(if miRNA) --AG                    CUGA
    UUGAUGUGGCAAGUUAACUG    U
    ||||||||||||||||||||
    GAUUGCACUGUUCAAUUGAC    G
UGUA                    CAGU
Stem-loop sequence AGUUGAUGUGGCAAGUUAACUGCUGAUGUGACCAGUUAACUUGUCACGUUAGAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012606482.1
ncRNA:24   UCGUCAAUUGAACGGUGUAGUUGA   1
  |||||||||||||||||||||=|*
targets:502   AGCAGUUAACUUGCCACAUCAGCA   525

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105781975 (LOC105781975), transcript variant X1, mRNA uncharacterized LOC105781975(LOC105781975) coding protein psRNATarget