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BaseInfo

ncRNA ID novel_gra_miR162
Species Gossypium raimondii
Class miRNA
Genome position Chr5:1567476-1567551 [+]
Reference genome Graimondii2_0
Source SRR616255;SRR616256;SRR616257
Length 21
Mature sequence(if miRNA) 56 - UGUGUUCUCAGGUCGUCCCUG - 76
Stem-loop(if miRNA) --GU U      U          ----U   UG UUU   A
    G CGACCU AGAAUACAUG     GAU  U   UCG U
    | |||||| ||||||||||     |||  |   |||
    C GCUGGA UCUUGUGUAC     UUG  A   AGC U
GUCC U      C          UUUGC   GU --U   U
Stem-loop sequence GUGUCGACCUUAGAAUACAUGUGAUUGUUUUUCGAUUUCGAUAUGGUUCGUUUCAUGUGUUCUCAGGUCGUCCCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012589544.1
ncRNA:21   GUCCCUGCUGGACUC-UUGUGU   1
  =||||||||||||||-||||||
targets:528   UAGGGACGACCUGAGUAACACA   549

3.0 PREDICTED: Gossypium raimondii cucumber peeling cupredoxin-like (LOC105769114), mRNA cucumber peeling cupredoxin-like(LOC105769114) coding protein psRNATarget