ncRNA ID | novel_gra_miR162 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr5:1567476-1567551 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255;SRR616256;SRR616257 |
Length | 21 |
Mature sequence(if miRNA) | 56 - UGUGUUCUCAGGUCGUCCCUG - 76 |
Stem-loop(if miRNA) |
--GU U      U          ----U   UG UUU   A     G CGACCU AGAAUACAUG     GAU  U   UCG U     | |||||| ||||||||||     |||  |   |||     C GCUGGA UCUUGUGUAC     UUG  A   AGC U GUCC U      C          UUUGC   GU --U   U |
Stem-loop sequence | GUGUCGACCUUAGAAUACAUGUGAUUGUUUUUCGAUUUCGAUAUGGUUCGUUUCAUGUGUUCUCAGGUCGUCCCUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012589544.1 |
|
3.0 | PREDICTED: Gossypium raimondii cucumber peeling cupredoxin-like (LOC105769114), mRNA | cucumber peeling cupredoxin-like(LOC105769114) | coding protein | psRNATarget |