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BaseInfo

ncRNA ID novel_gra_miR161
Species Gossypium raimondii
Class miRNA
Genome position Chr5:14443455-14443530 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 53 - CUGACGUGGAUGCGAUUUCCUGGC - 76
Stem-loop(if miRNA) --         A       A                AC
  CAGGAAAUC CAUCCAC UCAGUGCGAGUUGCUG  A
  ||||||||| ||||||| ||||||||||||||||
  GUCCUUUAG GUAGGUG AGUCACGCUCAAUGAC  U
CG         C       C                GG
Stem-loop sequence CAGGAAAUCACAUCCACAUCAGUGCGAGUUGCUGACAUGGCAGUAACUCGCACUGACGUGGAUGCGAUUUCCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012622070.1
ncRNA:24   CGGUCCUUUAGCGUAGGUGCAGUC   1
  |=||**|||||||=||||||||||
targets:1122   GUCAACAAAUCGCGUCCACGUCAG   1145

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105793143 (LOC105793143), mRNA uncharacterized LOC105793143(LOC105793143) coding protein psRNATarget