Search result

BaseInfo

ncRNA ID novel_gra_miR160
Species Gossypium raimondii
Class miRNA
Genome position Chr4:219876-219945 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 20
Mature sequence(if miRNA) 51 - UUGGCGUUCUGUCCACCUCC - 70
Stem-loop(if miRNA) --       U   U   C     CUAAUA UU   A
  UUGGCGU CUG CCA CUCCA      C  GUU C
  ||||||| ||| ||| |||||      |  |||
  AACUGUA GAC GGU GAGGU      G  CGA C
CA       U   C   C     --AAAG UU   U
Stem-loop sequence UUGGCGUUCUGUCCACCUCCACUAAUACUUGUUACCUAGCUUGGAAAUGGAGCUGGCCAGUAUGUCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012611893.1
ncRNA:20   CCUCCACCUGUCUUGCGGUU   1
  ||||||||||||||=|||||
targets:1324   GGAGGUGGACAGAAUGCCAA   1343

1.5 PREDICTED: Gossypium raimondii F-box only protein 6 (LOC105785748), mRNA F-box only protein 6(LOC105785748) coding protein psRNATarget
XM_012623676.1
ncRNA:20   CCUCCACCUGUCUUGCGGUU   1
  ||||||*|||||||=|||||
targets:1298   GGAGGUUGACAGAAUGCCAA   1317

2.5 PREDICTED: Gossypium raimondii F-box only protein 6-like (LOC105794488), mRNA F-box only protein 6-like(LOC105794488) coding protein psRNATarget