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BaseInfo

ncRNA ID	novel_gra_miR158
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:1051834-1051923 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	21
Mature sequence(if miRNA)	70 - CAGAAUGACCAAUUUACUCUU - 90
Stem-loop(if miRNA)	--         U   CU    A         GG        G UA   GAGUAAAUU GUU  UUCU UUAAAAUUU  AUCCAUUU U  A   ||||||||| |||  |||| |||||||||  |||||||| |  C   CUCAUUUAA CAG  AAGA AAUUUUGAA  UAGGUAAA G  G UU         C   -U    C         AA        G UG
Stem-loop sequence	GAGUAAAUUUGUUCUUUCUAUUAAAAUUUGGAUCCAUUUGUUAACGGUGGAAAUGGAUAAAAGUUUUAACAGAAUGACCAAUUUACUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012624832.1	ncRNA:21   UUCUCAUUUAACCAGUAAGAC   1   |||||||||||*||||||||| targets:1275   AAGAGUAAAUUAGUCAUUCUG   1295 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized protein C18H10.07 (LOC105795278), transcript variant X3, mRNA	uncharacterized protein C18H10.07(LOC105795278)	coding protein	psRNATarget
XM_012628005.1	ncRNA:21   UUCUCAUUUAACCAGUAAGAC   1   ||*||*||||||||||||||| targets:1772   AAAAGCAAAUUGGUCAUUCUG   1792 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X4, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget
XM_012628002.1	ncRNA:21   UUCUCAUUUAACCAGUAAGAC   1   ||*||*||||||||||||||| targets:1849   AAAAGCAAAUUGGUCAUUCUG   1869 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X1, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget
XM_012625097.1	ncRNA:21   UUCUCAUUUAACCAGUAAGAC   1   |||||*|||*||||||||||| targets:1100   AAGAGCAAAAUGGUCAUUCUG   1120 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii partner of Y14 and mago-like (LOC105795464), mRNA	partner of Y14 and mago-like(LOC105795464)	coding protein	psRNATarget
XM_012603114.1	ncRNA:21   UUCUCAUUUAACCAGUAA-GAC   1   ||||||||||||||||||-||| targets:820   AAGAGUAAAUUGGUCAUUUCUG   841 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105779366 (LOC105779366), mRNA	uncharacterized LOC105779366(LOC105779366)	coding protein	psRNATarget