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BaseInfo

ncRNA ID	novel_gra_miR153
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:3520703-3520870 [-]
Reference genome	Graimondii2_0
Source	SRR616255
Length	24
Mature sequence(if miRNA)	1 - AAAAGACCACUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	--     A      U  C             UAA      CCC                -C GGCAUGACUGACUGAAUAAUCA   UCAAA AGUAAA UG UCUUUUUUGUUAA   UUUCAU   UUUCUAUUGUUAAAAA  U                      G   ||||| |||||| || |||||||||||||   ||||||   ||||||||||||||||  |                      A   AGUUU UCGUUU AC AGAAAAGACAAUU   AAAGUA   AAAGAUGGCAAUUUUU  C                      U CU     C      C  C             UUA      UAU                AA UAGAGAUAUGUAAUCGUAGUUA
Stem-loop sequence	UCAAAAAGUAAAUUGCUCUUUUUUGUUAAUAAUUUCAUCCCUUUCUAUUGUUAAAAACUGGCAUGACUGACUGAAUAAUCAGAUAUUGAUGCUAAUGUAUAGAGAUCAAUUUUUAACGGUAGAAAUAUAUGAAAAUUUUAACAGAAAAGACCACUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012628326.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   |||=||||||||||*||||||||| targets:1884   GAUUAAAGAGCAAAUUGGUCUUUU   1907 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At1g33350 (LOC105798303), mRNA	pentatricopeptide repeat-containing protein At1g33350(LOC105798303)	coding protein	psRNATarget
XM_012607759.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   |=|||||||*||||*||||||||| targets:1158   GGUCAAAGAACAAAUUGGUCUUUU   1181 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii bifunctional epoxide hydrolase 2-like (LOC105782779), mRNA	bifunctional epoxide hydrolase 2-like(LOC105782779)	coding protein	psRNATarget
XM_012625918.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   *||=||||||||||*||||||||* targets:1740   AAUUAAAGAGCAAACUGGUCUUUC   1763 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cytochrome P450 71D10-like (LOC105796302), mRNA	cytochrome P450 71D10-like(LOC105796302)	coding protein	psRNATarget
XM_012622651.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   **||||||||*||=|||||||||| targets:937   UCUCAAAGAGAAAGGUGGUCUUUU   960 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105793805 (LOC105793805), transcript variant X1, mRNA	hypothetical protein(LOC105793805)	coding protein	psRNATarget
XM_012589380.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   **||||||||*||=|||||||||| targets:935   UCUCAAAGAGAAAGGUGGUCUUUU   958 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105769023 (LOC105769023), transcript variant X2, mRNA	uncharacterized LOC105769023(LOC105769023)	coding protein	psRNATarget
XM_012589379.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   **||||||||*||=|||||||||| targets:1073   UCUCAAAGAGAAAGGUGGUCUUUU   1096 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105769023 (LOC105769023), transcript variant X1, mRNA	uncharacterized LOC105769023(LOC105769023)	coding protein	psRNATarget
XM_012617635.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   *|||*|||||=|||*||||||||| targets:3818   UAUCUAAGAGUAAAUUGGUCUUUU   3841 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At5g57250, mitochondrial (LOC105790172), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At5g57250, mitochondrial(LOC105790172)	coding protein	psRNATarget
XM_012613880.1	ncRNA:24   CUAGUUUCUCGUUUCACCAGAAAA   1   *|*||||*||||||*||||||||| targets:1249   AAGCAAAAAGCAAAUUGGUCUUUU   1272 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor bHLH121-like (LOC105787476), mRNA	transcription factor bHLH121-like(LOC105787476)	coding protein	psRNATarget