Search result

BaseInfo

ncRNA ID novel_gra_miR152
Species Gossypium raimondii
Class miRNA
Genome position Chr4:12325039-12325110 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616256;SRR616257
Length 21
Mature sequence(if miRNA) 52 - UGGAGAAGCAGGGCACGUGCA - 72
Stem-loop(if miRNA) --        CA              G  UAAUUUC
  UGGAGAAG  GGGCACGUGCAAAA UG       U
  ||||||||  |||||||||||||| ||       C
  ACCUUUUC  CUCGUGCACGUUUU GC       U
CC        CC              -  CUUCUCU
Stem-loop sequence UGGAGAAGCAGGGCACGUGCAAAAGUGUAAUUUCUCUUCUCUUCCGUUUUGCACGUGCUCCCCUUUUCCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012583327.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:911   UUUACGUGCCCUGCUUCUCCA   931

1.0 PREDICTED: Gossypium raimondii NAC domain-containing protein 100 (LOC105764664), mRNA NAC domain-containing protein 100(LOC105764664) coding protein psRNATarget
XM_012633473.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **=||||||||||||||||||
targets:917   CAUACGUGCCCUGCUUCUCCA   937

1.0 PREDICTED: Gossypium raimondii NAC domain-containing protein 100-like (LOC105802057), mRNA NAC domain-containing protein 100-like(LOC105802057) coding protein psRNATarget
XM_012598099.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *|||*|||||||||||||||=
targets:829   AGCAAGUGCCCUGCUUCUCCG   849

2.0 PREDICTED: Gossypium raimondii NAC domain-containing protein 21/22-like (LOC105775593), mRNA NAC domain-containing protein 21/22-like(LOC105775593) coding protein psRNATarget