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BaseInfo

ncRNA ID novel_gra_miR151
Species Gossypium raimondii
Class miRNA
Genome position Chr4:18559067-18559261 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616256
Length 24
Mature sequence(if miRNA) 172 - AUGAAACUGUGAUUCCAUGUCAUC - 195
Stem-loop(if miRNA) --               C    C  C   AUCC    C              C      A   U   C CU         A A     -AG     UUUA
  AUGAAACUGUGAUUC AUGU AU UCU    UUUU UAAUAGGAGAAUGA AAAUCA AUU UUC U  UGAUUUUUA C UUUUU   UUGGA    A
  ||||||||||||||| |||| || |||    |||| |||||||||||||| |||||| ||| ||| |  ||||||||| | |||||   |||||
  UACUUUGACAUUAAG UAUA UA AGA    AAAA AUUAUUUUCUUACU UUUAGU UAA AAG A  AUUAAAAAU G AAAAG   AACUU    A
UA               A    A  -   ---A    A              A      C   U   A AG         C A     AAG     UUUU
Stem-loop sequence AUGAAACUGUGAUUCCAUGUCAUCUCUAUCCUUUUCUAAUAGGAGAAUGACAAAUCAAAUUUUUCCUCUUGAUUUUUAACAUUUUUAGUUGGAUUUAAAUUUUUUCAAGAAGAAAAAGCUAAAAAUUAGAAAGAAUAAUCUGAUUUAUCAUUCUUUUAUUAAAAAAAAGAAUAAUAUAGAAUUACAGUUUCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012613692.1
ncRNA:24   CUACUGUACCUUAGUGUCAAAGUA   1
  *||||||||||||||||||||=||
targets:1701   AAUGACAUGGAAUCACAGUUUUAU   1724

1.5 PREDICTED: Gossypium raimondii probable WRKY transcription factor 9 (LOC105787323), mRNA probable WRKY transcription factor 9(LOC105787323) coding protein psRNATarget