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BaseInfo

ncRNA ID	novel_gra_miR136
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:8936164-8936269 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	21
Mature sequence(if miRNA)	1 - UCAACUAUGCUUGUGGAGUCA - 21
Stem-loop(if miRNA)	--            G            UC  CA     --------      UUUUU   ACUCCACAAGCG AGUUGAGAUUUU  CA  UGUCU        UAUUUA     U   |||||||||||| ||||||||||||  ||  |||||        ||||||   UGAGGUGUUCGU UCAACUCUAAAA  GU  ACAGG        AUAAAU     A AC            A            CU  AC     AAUUUAAC      UUUUA
Stem-loop sequence	ACUCCACAAGCGGAGUUGAGAUUUUUCCACAUGUCUUAUUUAUUUUUUAAUUUUUAAAUACAAUUUAAGGACACAUGUCAAAAUCUCAACUAUGCUUGUGGAGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599583.1	ncRNA:21   ACUGAGGUGUUCGUAUCAACU   1   |*|||=||||||||*|||||| targets:1321   UAACUUCACAAGCAGAGUUGA   1341 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii long chain base biosynthesis protein 1-like (LOC105776720), transcript variant X5, mRNA	long chain base biosynthesis protein 1-like(LOC105776720)	coding protein	psRNATarget
XM_012599582.1	ncRNA:21   ACUGAGGUGUUCGUAUCAACU   1   |*|||=||||||||*|||||| targets:1546   UAACUUCACAAGCAGAGUUGA   1566 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii long chain base biosynthesis protein 1-like (LOC105776720), transcript variant X4, mRNA	long chain base biosynthesis protein 1-like(LOC105776720)	coding protein	psRNATarget
XM_012599581.1	ncRNA:21   ACUGAGGUGUUCGUAUCAACU   1   |*|||=||||||||*|||||| targets:1884   UAACUUCACAAGCAGAGUUGA   1904 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii long chain base biosynthesis protein 1-like (LOC105776720), transcript variant X3, mRNA	long chain base biosynthesis protein 1-like(LOC105776720)	coding protein	psRNATarget
XM_012599579.1	ncRNA:21   ACUGAGGUGUUCGUAUCAACU   1   |*|||=||||||||*|||||| targets:2204   UAACUUCACAAGCAGAGUUGA   2224 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii long chain base biosynthesis protein 1-like (LOC105776720), transcript variant X1, mRNA	long chain base biosynthesis protein 1-like(LOC105776720)	coding protein	psRNATarget
XM_012599580.1	ncRNA:21   ACUGAGGUGUUCGUAUCAACU   1   |*|||=||||||||*|||||| targets:2288   UAACUUCACAAGCAGAGUUGA   2308 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii long chain base biosynthesis protein 1-like (LOC105776720), transcript variant X2, mRNA	long chain base biosynthesis protein 1-like(LOC105776720)	coding protein	psRNATarget