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BaseInfo

ncRNA ID novel_gra_miR134
Species Gossypium raimondii
Class miRNA
Genome position Chr4:32099153-32099233 [+]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 21
Mature sequence(if miRNA) 61 - UUGGACCAGGCUUCAUUCCCC - 81
Stem-loop(if miRNA) --      UU            GA   CUUUUCUUGCUAA
  GGAAUG  GCCUGGUUCAAG  CAC             C
  ||||||  ||||||||||||  |||             C
  CCUUAC  CGGACCAGGUUC  GUG             C
CC      UU            UC   UCUACCUUUAAAU
Stem-loop sequence GGAAUGUUGCCUGGUUCAAGGACACCUUUUCUUGCUAACCCUAAAUUUCCAUCUGUGCUCUUGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012607484.1
ncRNA:21   CCCCUUACUUCGGACCAGGUU   1
  **||=|||||||||||||||=
targets:974   CUGGGAUGAAGCCUGGUCCAG   994

2.0 PREDICTED: Gossypium raimondii homeobox-leucine zipper protein REVOLUTA-like (LOC105782624), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC105782624) coding protein psRNATarget
XM_012587820.1
ncRNA:21   CCCCUUACUUCGGACCAGGUU   1
  **|||||||||||||||||==
targets:1582   CUGGAAUGAAGCCUGGUCCGG   1602

2.5 PREDICTED: Gossypium raimondii homeobox-leucine zipper protein ATHB-15 (LOC105768081), mRNA homeobox-leucine zipper protein ATHB-15(LOC105768081) coding protein psRNATarget