Search result

BaseInfo

ncRNA ID	novel_gra_miR132
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:28879195-28879249 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAAGGACUAAUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	----AAA    U  U          AU U        GGAC AA UUGCUCUUUG  C A        |||| || ||||||||||  |        UCUG UU AAUGAGAGAC  G A UUUUUUA    -  U          AU U
Stem-loop sequence	AAAGGACUAAUUUGCUCUUUGAUCUAAUGUACAGAGAGUAAUUUGUCUAUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012627936.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   ||*|||||||||||||||||=||| targets:1175   GACCAAAGAGCAAAUUAGUCUUUU   1198 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X3, mRNA	SAL1 phosphatase-like(LOC105798049)	coding protein	psRNATarget
XM_012633992.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1172   GUUCAAAGAGCAAAUUGGUCCUUU   1195 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1224   GUUCAAAGAGCAAAUUGGUCCUUU   1247 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1228   GUUCAAAGAGCAAAUUGGUCCUUU   1251 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1292   GUUCAAAGAGCAAAUUGGUCCUUU   1315 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012607759.1	ncRNA:24   CUAGUUU-CUCGUUUAAUCAGGAAA   1   *|**|||-||||||||||||||||* targets:1126   AAAAAAAUGAGCAAAUUAGUCCUUA   1150 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii bifunctional epoxide hydrolase 2-like (LOC105782779), mRNA	bifunctional epoxide hydrolase 2-like(LOC105782779)	coding protein	psRNATarget