Search result

BaseInfo

ncRNA ID novel_gra_miR126
Species Gossypium raimondii
Class miRNA
Genome position Chr3:6949295-6949375 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - GUGGUGCUUAUCUGAUAGGCGGCA - 24
Stem-loop(if miRNA) --   G        U        G        ACC     
  GUG UGCUUAUC GAUAGGCG CACCAGUG   CCUAUC
  ||| |||||||| |||||||| ||||||||   |||||U
  CAC GCGAAUAG CUAUCCGU GUGGUCAC   GGAUAC
CA   G        U        G        GAC     
Stem-loop sequence GUGGUGCUUAUCUGAUAGGCGGCACCAGUGACCCCUAUCUCAUAGGCAGCACUGGUGGUGCCUAUCUGAUAAGCGGCACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012632413.1
ncRNA:24   ACGGCGGAUAGUCUAUUCGUGGUG   1
  ||*|||||*|||||||=|||||||
targets:97   UGGCGCCUCUCAGAUAGGCACCAC   120

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105801078 (LOC105801078), mRNA uncharacterized LOC105801078(LOC105801078) coding protein psRNATarget