| ncRNA ID | ath-miR171a-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:19073434-19073556 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 88 - UGAUUGAGCCGCGCCAAUAUC - 108 |
| Stem-loop(if miRNA) |
CC UU C C -C CCUGACCACACACGUA AUGAGAGAGU CU GAUAUUGGC UGGUUCA UCAGAU UUA G |||||||||| || ||||||||| ||||||| |||||| ||| A UGCUCUCUCA GA CUAUAACCG GCCGAGU AGUCUA AGA U -U CU C U UU UCUCUCUUAUUACAUA |
| Stem-loop sequence | AUGAGAGAGUCCCUUUGAUAUUGGCCUGGUUCACUCAGAUCUUACCUGACCACACACGUAGAUAUACAUUAUUCUCUCUAGAUUAUCUGAUUGAGCCGCGCCAAUAUCUCAGUACUCUCUCGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF036303.1 |
|
0.0 | Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds | NA | coding protein | psRNATarget | |||||||||
| BX820692.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AY133537.1 |
|
0.0 | Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BX826491.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BX827001.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BX826648.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AY096372.1 |
|
0.0 | Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BT053760.1 |
|
0.0 | Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BT020591.1 |
|
0.0 | Arabidopsis thaliana At2g45160 gene, complete cds | NA | coding protein | psRNATarget | |||||||||
| AF462831.1 |
|
0.0 | Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BX819093.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AY064062.1 |
|
0.0 | Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BX823015.1 |
|
0.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BT004053.1 |
|
0.0 | Arabidopsis thaliana clone RAFL15-13-A09 (R20463) putative SCARECROW gene regulator (At2g45160) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_116232.5 |
|
0.0 | Arabidopsis thaliana GRAS family transcription factor (HAM3), mRNA | GRAS family transcription factor(HAM3) | coding protein | psRNATarget | |||||||||
| NM_115927.5 |
|
0.0 | Arabidopsis thaliana GRAS family transcription factor (HAM2), mRNA | GRAS family transcription factor(HAM2) | coding protein | psRNATarget | |||||||||
| NM_130079.3 |
|
0.0 | Arabidopsis thaliana GRAS family transcription factor (HAM1), mRNA | GRAS family transcription factor(HAM1) | coding protein | psRNATarget | |||||||||
| BX820366.1 |
|
1.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |
| 1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
| 2 | PMID:12202040
"Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |