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BaseInfo

ncRNA ID novel_gra_miR122
Species Gossypium raimondii
Class miRNA
Genome position Chr3:14451543-14451633 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 21
Mature sequence(if miRNA) 71 - UUUGGUCCUUGCACUUGGCAA - 91
Stem-loop(if miRNA) --      C     A                       UAUCAUA
  UUUGGU CUUGC CUUGGCAAAUGUAAAAGUUUGAU       G
  |||||| ||||| |||||||||||||||||||||||       U
  AAACCA GAACG GAACCGUUUACAUUUUCAAACUA       G
UG      U     A                       CUACACC
Stem-loop sequence UUUGGUCCUUGCACUUGGCAAAUGUAAAAGUUUGAUUAUCAUAGUGCCACAUCAUCAAACUUUUACAUUUGCCAAGAGCAAGUACCAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012613432.1
ncRNA:21   AACGGUUCACGUUCCUGGUUU   1
  *|||||||||||||||*||||
targets:1393   CUGCCAAGUGCAAGGAACAAA   1413

1.5 PREDICTED: Gossypium raimondii uncharacterized LOC105786966 (LOC105786966), mRNA uncharacterized LOC105786966(LOC105786966) coding protein psRNATarget
XM_012613559.1
ncRNA:21   AACGGUUCACGUUCCUGGUUU   1
  *|||||*|||||||||*||||
targets:1465   CUGCCACGUGCAAGGAACAAA   1485

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105787114 (LOC105787114), mRNA uncharacterized LOC105787114(LOC105787114) coding protein psRNATarget