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BaseInfo

ncRNA ID	novel_gra_miR118
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr3:16706914-16707095 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616256
Length	22
Mature sequence(if miRNA)	1 - UAGCCAAGGAUGACUUGCCUGU - 22
Stem-loop(if miRNA)	--     -    -         A  U    -       U    U    CU  U    G      UCC  UUGUCAAUGUACGUGCAUUUGGGUA   AGGCA GUCA CCUUGGCUA CU GACA GGUUCUU UCUU CAUG  AG CCUU UCUUCC   CC                         U   ||||| |||| ||||||||| || |||| ||||||| |||| ||||  || |||| ||||||   ||   UCCGU CAGU GGAACCGAU GG UUGU CUAAGAA AGAA GUAC  UC GGAG AGAAGG   AG                         A UG     U    A         -  U    U       U    -    CU  U    -      UAA  UAACUAAGGAACAUAAGGUAUAUAU
Stem-loop sequence	AGGCAGUCACCUUGGCUAACUUGACAGGUUCUUUUCUUUCAUGCUAGUCCUUGUCUUCCUCCCCUUGUCAAUGUACGUGCAUUUGGGUAUAUAUAUAUGGAAUACAAGGAAUCAAUGAAAUGGAAGAGAGGUCUUCCAUGAAGAUAAGAAUCUUGUUUGGUAGCCAAGGAUGACUUGCCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012629760.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ==|||||||||||||||||||| targets:1863   GUAGGCAAGUCAUCCUUGGCUA   1884 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii ERAD-associated E3 ubiquitin-protein ligase HRD1B-like (LOC105799293), transcript variant X2, mRNA	ERAD-associated E3 ubiquitin-protein ligase HRD1B-like(LOC105799293)	coding protein	psRNATarget
XM_012609707.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1136   ACCGGCAACUCAUCCUUGGCUU   1157 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609709.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1137   ACCGGCAACUCAUCCUUGGCUU   1158 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609708.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1150   ACCGGCAACUCAUCCUUGGCUU   1171 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609706.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1153   ACCGGCAACUCAUCCUUGGCUU   1174 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012618940.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   |||*||*||||||||||||||= targets:1061   ACACGCUAGUCAUCCUUGGCUG   1082 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105791062 (LOC105791062), mRNA	uncharacterized LOC105791062(LOC105791062)	coding protein	psRNATarget