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BaseInfo

ncRNA ID	novel_gra_miR108
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr3:41144402-41144549 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	21
Mature sequence(if miRNA)	1 - UGCAUUUGCACCUGCACCUUC - 21
Stem-loop(if miRNA)	--    U     C               UU     -   UUGG   --AG     GAAAC     -     - A   U   UGCA UUGCA CUGCACCUUCUUUGU  UCCUC AGU    UUC    CAUCA     UAAAC CAUGA C GUC C   |||| ||||| |||||||||||||||  ||||| |||    |||    |||||     ||||| ||||| | |||   ACGU AAUGU GACGUGGAAGAAACA  GGGAG UUA    GAG    GUGGU     AUUUG GUACU G CGG A GG    U     A               -U     G   UAUA   GGAA     --GAU     U     A A   U
Stem-loop sequence	UGCAUUUGCACCUGCACCUUCUUUGUUUUCCUCAGUUUGGUUCAGCAUCAGAAACUAAACCAUGACAGUCUCAUGGCAGAUCAUGUGUUUAUAGUGGUGAAGGGAGAUAUAUUGGAGGGUACAAAGAAGGUGCAGAUGUAAUUGCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012631793.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||||||||||||||| targets:309   GCAGGUGCAGGUGCAAAUGCA   329 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105800586 (LOC105800586), mRNA	uncharacterized LOC105800586(LOC105800586)	coding protein	psRNATarget
XM_012596289.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*|||||||||||||=||||| targets:1105   GCAGGUGCAGGUGCAGAUGCA   1125 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii protein ODORANT1-like (LOC105774006), mRNA	protein ODORANT1-like(LOC105774006)	coding protein	psRNATarget
XM_012583521.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||*|||||||||||* targets:1091   GCAGGUGCUGGUGCAAAUGCC   1111 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LOC105764768), mRNA	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY(LOC105764768)	coding protein	psRNATarget
XM_012615696.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:558   GCAGGUUCAGGUUCAAAUGCA   578 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X3, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget
XM_012615688.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:508   GCAGGUUCAGGUUCAAAUGCA   528 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X2, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget
XM_012615680.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:556   GCAGGUUCAGGUUCAAAUGCA   576 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X1, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget