ncRNA ID | novel_gra_miR103 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr2:11558249-11558447 [-] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 176 - AUGAAACUGUGAUUCCACGUCAUU - 199 |
Stem-loop(if miRNA) |
--               C CG C      A                           C        C  -  CA         AAU     UUGGAUUUGA   AUGAAACUGUGAUUC A  U AUUCCU UCUCUUUCCAAUAAGAGCAUGACAAAU GGAUUUUU CU CU  AUUUUUAGC   UUUAG          A   ||||||||||||||| |  | |||||| ||||||||||||||||||||||||||| |||||||| || ||  |||||||||   |||||          U   UACUUUGACACUAAG U  A UAGGGA AGGGAAAGGUUAUUCUCGUACUGUUUA UCUAAAAA GA GA  UAAAAGUUG   AAAAA          U CA               A AU A      C                           U        U  U  -C         --A     GAGGACUUUU |
Stem-loop sequence | AUGAAACUGUGAUUCCACGUCAUUCCUAUCUCUUUCCAAUAAGAGCAUGACAAAUCGGAUUUUUCCUCUCAAUUUUUAGCAAUUUUAGUUGGAUUUGAAUUUUUUCAGGAGAAAAAAGUUGAAAAUCAGUAGUAAAAAUCUUAUUUGUCAUGCUCUUAUUGGAAAGGGACAGGGAUAAUAUAGAAUCACAGUUUCAUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012613692.1 |
|
2.5 | PREDICTED: Gossypium raimondii probable WRKY transcription factor 9 (LOC105787323), mRNA | probable WRKY transcription factor 9(LOC105787323) | coding protein | psRNATarget |