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BaseInfo

ncRNA ID novel_gra_miR103
Species Gossypium raimondii
Class miRNA
Genome position Chr2:11558249-11558447 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 176 - AUGAAACUGUGAUUCCACGUCAUU - 199
Stem-loop(if miRNA) --               C CG C      A                           C        C  -  CA         AAU     UUGGAUUUGA
  AUGAAACUGUGAUUC A  U AUUCCU UCUCUUUCCAAUAAGAGCAUGACAAAU GGAUUUUU CU CU  AUUUUUAGC   UUUAG          A
  ||||||||||||||| |  | |||||| ||||||||||||||||||||||||||| |||||||| || ||  |||||||||   |||||          U
  UACUUUGACACUAAG U  A UAGGGA AGGGAAAGGUUAUUCUCGUACUGUUUA UCUAAAAA GA GA  UAAAAGUUG   AAAAA          U
CA               A AU A      C                           U        U  U  -C         --A     GAGGACUUUU
Stem-loop sequence AUGAAACUGUGAUUCCACGUCAUUCCUAUCUCUUUCCAAUAAGAGCAUGACAAAUCGGAUUUUUCCUCUCAAUUUUUAGCAAUUUUAGUUGGAUUUGAAUUUUUUCAGGAGAAAAAAGUUGAAAAUCAGUAGUAAAAAUCUUAUUUGUCAUGCUCUUAUUGGAAAGGGACAGGGAUAAUAUAGAAUCACAGUUUCAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012613692.1
ncRNA:24   UUACUGCACCUUAGUGUCAAAGUA   1
  ||||||*||||||||||||||=||
targets:1701   AAUGACAUGGAAUCACAGUUUUAU   1724

2.5 PREDICTED: Gossypium raimondii probable WRKY transcription factor 9 (LOC105787323), mRNA probable WRKY transcription factor 9(LOC105787323) coding protein psRNATarget