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BaseInfo

ncRNA ID novel_gra_miR90
Species Gossypium raimondii
Class miRNA
Genome position Chr8:27017345-27017411 [+]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 24
Mature sequence(if miRNA) 1 - GUUAUAGAACAUGACCUUUAGCGG - 24
Stem-loop(if miRNA) --    U   A    AC           C   AC
  GUUA AGA CAUG  CUUUAGCGGUG UUU  C
  |||| ||| ||||  ||||||||||| |||
  CGAU UCU GUAC  GAAAUCGCCGC AAA  C
GG    U   A    AA           -   CA
Stem-loop sequence GUUAUAGAACAUGACCUUUAGCGGUGCUUUACCCACAAACGCCGCUAAAGAACAUGAUCUUUAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012598639.1
ncRNA:24   GGCGAUUUCCAGUACAAGAUAUUG   1
  ==*=*||||*|||||||||||||=
targets:606   UUAUAAAAGAUCAUGUUCUAUAAU   629

2.0 PREDICTED: Gossypium raimondii protein NEDD1-like (LOC105776140), mRNA protein NEDD1-like(LOC105776140) coding protein psRNATarget