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BaseInfo

ncRNA ID	novel_gra_miR80
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:11418926-11419005 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616256;SRR616257
Length	21
Mature sequence(if miRNA)	1 - UGACAACGAGAGAGAGCACGU - 21
Stem-loop(if miRNA)	--     A   G                GC       ACA   UGACA CGA AGAGAGCACGUUUGUA  CAUUCAU   U   ||||| ||| ||||||||||||||||  |||||||   ACUGU GCU UCUCUCGUGCGAACAU  GUAGGUA   G GU     G   A                AC       CUG
Stem-loop sequence	UGACAACGAGAGAGAGCACGUUUGUAGCCAUUCAUACAUGGUCAUGGAUGCAUACAAGCGUGCUCUCUAUCGGUGUCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012635480.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1646   GCGUGCUCUCUGUCGUUGUCA   1666 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635481.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1556   GCGUGCUCUCUGUCGUUGUCA   1576 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635486.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1646   GCGUGCUCUCUGUCGUUGUCA   1666 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635483.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1646   GCGUGCUCUCUGUCGUUGUCA   1666 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635484.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1647   GCGUGCUCUCUGUCGUUGUCA   1667 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X5, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635482.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:107   GCGUGCUCUCUGUCGUUGUCA   127 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget
XM_012635485.1	ncRNA:21   UGCACGAGAGAGAGCAACAGU   1   =||||||||||*||||||||| targets:1649   GCGUGCUCUCUGUCGUUGUCA   1669 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic (LOC105803354), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic(LOC105803354)	coding protein	psRNATarget