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BaseInfo

ncRNA ID	novel_gra_miR77
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:5176246-5176400 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAAGGACUAAUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	--   U                 -CUAA    A               UC              UUGUAACUGUC      UU   UCA GGAGUAAAUUGGUCCUU     UAAA AUUUCAUCUAUUUUU  UGUUAAAAAUUGGU           UGGUUA  C   ||| |||||||||||||||||     |||| |||||||||||||||  ||||||||||||||           ||||||   AGU UCUCGUUUAAUCAGGAA     AUUU UAAAGUAGGUAAAGA  ACAAUUUUUAACCG           ACCGAU  U CU   U                 AAACA    C               UC              ----------U      UG
Stem-loop sequence	UCAUGGAGUAAAUUGGUCCUUCUAAUAAAAAUUUCAUCUAUUUUUUCUGUUAAAAAUUGGUUUGUAACUGUCUGGUUAUUCUGUUAGCCAUGCCAAUUUUUAACACUAGAAAUGGAUGAAAUCUUUAACAAAAAGGACUAAUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012627936.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   ||*|||||||||||||||||=||| targets:1175   GACCAAAGAGCAAAUUAGUCUUUU   1198 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X3, mRNA	SAL1 phosphatase-like(LOC105798049)	coding protein	psRNATarget
XM_012633992.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1172   GUUCAAAGAGCAAAUUGGUCCUUU   1195 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1224   GUUCAAAGAGCAAAUUGGUCCUUU   1247 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1228   GUUCAAAGAGCAAAUUGGUCCUUU   1251 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:24   CUAGUUUCUCGUUUAAUCAGGAAA   1   |*||||||||||||||=||||||| targets:1292   GUUCAAAGAGCAAAUUGGUCCUUU   1315 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012607759.1	ncRNA:24   CUAGUUU-CUCGUUUAAUCAGGAAA   1   *|**|||-||||||||||||||||* targets:1126   AAAAAAAUGAGCAAAUUAGUCCUUA   1150 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii bifunctional epoxide hydrolase 2-like (LOC105782779), mRNA	bifunctional epoxide hydrolase 2-like(LOC105782779)	coding protein	psRNATarget