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BaseInfo

ncRNA ID	novel_gra_miR72
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:9657866-9658065 [+]
Reference genome	Graimondii2_0
Source	SRR616255
Length	23
Mature sequence(if miRNA)	178 - AGAGGGCAAAAUGCAAUCUGACU - 200
Stem-loop(if miRNA)	--  GA      A    C A     ---AC             C      A     G   U   C  CAAA      -  UU      CUA   UCAUGC     U   UU  AUUGCA UUUU C CCUCU     UAAAAAAAUGGGG AAAUUA UCUUU UAU UUA AU    GAGCAA UC  GUCCUU   GUU      AUUUC A   ||  |||||| |||| | |||||     ||||||||||||| |||||| ||||| ||| ||| ||    |||||| ||  ||||||   |||      |||||   AG  UAACGU AAAA G GGAGA     GUUUUUUUACCCC UUUAAU AGGGA AUA AAU UA    UUCGUU AG  CAGGAA   CAA      UAAAG U UC  UC      -    C -     AUCCA             A      C     G   C   U  ---A      U  -U      AAA   --CUUU     U
Stem-loop sequence	UUGAAUUGCAAUUUUCCACCUCUACUAAAAAAAUGGGGCAAAUUAAUCUUUGUAUUUUACAUCAAAGAGCAAUCUUGUCCUUCUAGUUUCAUGCAUUUCUAUUGAAAUUUUCAACAAAAAGGACUGAUUUGCUUAAUUUAACAUAGAGGGACUAAUUUACCCCAUUUUUUUGACCUAAGAGGGCAAAAUGCAAUCUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012632054.1	ncRNA:23   UCAGUCUAACGUAAAACGGGAGA   1   |||||||||||||||||||*||| targets:1047   AGUCAGAUUGCAUUUUGCCAUCU   1069 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative alanyl-tRNA editing protein alaX (LOC105800753), transcript variant X2, mRNA	putative alanyl-tRNA editing protein alaX(LOC105800753)	coding protein	psRNATarget
XM_012632053.1	ncRNA:23   UCAGUCUAACGUAAAACGGGAGA   1   |||||||||||||||||||*||| targets:1053   AGUCAGAUUGCAUUUUGCCAUCU   1075 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii putative alanyl-tRNA editing protein alaX (LOC105800753), transcript variant X1, mRNA	putative alanyl-tRNA editing protein alaX(LOC105800753)	coding protein	psRNATarget
XM_012628005.1	ncRNA:23   UC--AGUCUAACGUAAAACGGGAGA   1   ||--|=|||||||||||||||=||| targets:1705   AGAUUUAGAUUGCAUUUUGCCUUCU   1729 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X4, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget
XM_012628002.1	ncRNA:23   UC--AGUCUAACGUAAAACGGGAGA   1   ||--|=|||||||||||||||=||| targets:1782   AGAUUUAGAUUGCAUUUUGCCUUCU   1806 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X1, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget
XM_012628016.1	ncRNA:23   UCAGUCUAACGUAAAACGGGAGA   1   |||||||||*||||||*|||||| targets:2090   AGUCAGAUUACAUUUUACCCUCU   2112 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii regulatory protein NPR3-like (LOC105798099), mRNA	regulatory protein NPR3-like(LOC105798099)	coding protein	psRNATarget
XM_012617366.1	ncRNA:23   UCAGUCUAACGUAAAACGGGAGA   1   |*|==|||||||||||||=|||| targets:3524   AAUUGGAUUGCAUUUUGCUCUCU   3546 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii AP-2 complex subunit alpha-1-like (LOC105789999), transcript variant X2, mRNA	AP-2 complex subunit alpha-1-like(LOC105789999)	coding protein	psRNATarget