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BaseInfo

ncRNA ID	novel_gra_miR71
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:9289829-9290005 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	154 - AAAGGACCAGUUUGCUCUUUGAUC - 177
Stem-loop(if miRNA)	--      U           -A    AUUAAAAAUUUAUCUAUUUC    A UAAAAAUUGUUCCCUAUACAUCAGAAUGAGAUACGUGUAAUUUUCU   UCAAAG GCAAACUGGUC  UUCU                    UACU U                                              G   |||||| |||||||||||  ||||                    |||| |   AGUUUC CGUUUGACCAG  AAGA                    CUUU A                                              A CU      U           GA    -----------------CAA    - AAAGUAAAGAAAAAUGACAAUUUUUAACUACACCAACUGUCUUAUU
Stem-loop sequence	UCAAAGUGCAAACUGGUCAUUCUAUUAAAAAUUUAUCUAUUUCUACUAUUAAAAAUUGUUCCCUAUACAUCAGAAUGAGAUACGUGUAAUUUUCUGAUUAUUCUGUCAACCACAUCAAUUUUUAACAGUAAAAAGAAAUGAAAAUUUCAACAGAAAGGACCAGUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012605166.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   *||||||||||||||||||||||| targets:1262   AAUCAAAGAGCAAACUGGUCCUUU   1285 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012605165.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   *||||||||||||||||||||||| targets:1322   AAUCAAAGAGCAAACUGGUCCUUU   1345 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012625869.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   *||||||||*|||||||||||||| targets:1211   AAUCAAAGAACAAACUGGUCCUUU   1234 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012633992.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   |*||||||||||||=||||||||| targets:1172   GUUCAAAGAGCAAAUUGGUCCUUU   1195 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   |*||||||||||||=||||||||| targets:1224   GUUCAAAGAGCAAAUUGGUCCUUU   1247 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   |*||||||||||||=||||||||| targets:1228   GUUCAAAGAGCAAAUUGGUCCUUU   1251 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   |*||||||||||||=||||||||| targets:1292   GUUCAAAGAGCAAAUUGGUCCUUU   1315 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012625918.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   *||=||||||||||||||||=||* targets:1740   AAUUAAAGAGCAAACUGGUCUUUC   1763 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cytochrome P450 71D10-like (LOC105796302), mRNA	cytochrome P450 71D10-like(LOC105796302)	coding protein	psRNATarget
XM_012628011.1	ncRNA:24   CUAGUUUCUCGUUUGACCAGGAAA   1   |||||||*||=||||||||||||* targets:1075   GAUCAAAAAGUAAACUGGUCCUUC   1098 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii transcription factor PIF4-like (LOC105798095), mRNA	transcription factor PIF4-like(LOC105798095)	coding protein	psRNATarget