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BaseInfo

ncRNA ID	novel_gra_miR68
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:2233843-2233983 [-]
Reference genome	Graimondii2_0
Source	SRR616255
Length	21
Mature sequence(if miRNA)	1 - AAGGACUAAUUUGCUCUUUGA - 21
Stem-loop(if miRNA)	--                AUUUCUA     C    C   C       CUAUUAAAACUAGUAUAGAUCAUA   AAAGAGCAAAUUAGUC       UAAAA AUUU GUC AUUUGUA                        G   ||||||||||||||||       ||||| |||| ||| |||||||   UUUCUCGUUUAAUCAG       AUUUU UAAA UAG UAAAGAU                        A AG                GAAUACA     U    -   A       GUCAAUUUUUAACCAAAACUAAUA
Stem-loop sequence	AAAGAGCAAAUUAGUCAUUUCUAUAAAACAUUUCGUCCAUUUGUACUAUUAAAACUAGUAUAGAUCAUAGAAUAAUCAAAACCAAUUUUUAACUGUAGAAAUAGAUAAAUUUUUUAACAUAAGGACUAAUUUGCUCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012633992.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   ||||||||||||||=|||||| targets:1174   UCAAAGAGCAAAUUGGUCCUU   1194 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633993.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   ||||||||||||||=|||||| targets:1226   UCAAAGAGCAAAUUGGUCCUU   1246 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633989.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   ||||||||||||||=|||||| targets:1230   UCAAAGAGCAAAUUGGUCCUU   1250 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012633990.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   ||||||||||||||=|||||| targets:1294   UCAAAGAGCAAAUUGGUCCUU   1314 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA	syntaxin-22-like(LOC105802387)	coding protein	psRNATarget
XM_012627936.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   *|||||||||||||||||=|| targets:1177   CCAAAGAGCAAAUUAGUCUUU   1197 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X3, mRNA	SAL1 phosphatase-like(LOC105798049)	coding protein	psRNATarget
XM_012607759.1	ncRNA:21   AGUUU-CUCGUUUAAUCAGGAA   1   **|||-|||||||||||||||| targets:1128   AAAAAUGAGCAAAUUAGUCCUU   1149 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii bifunctional epoxide hydrolase 2-like (LOC105782779), mRNA	bifunctional epoxide hydrolase 2-like(LOC105782779)	coding protein	psRNATarget
XM_012627101.1	ncRNA:21   AGUUUCUCGUUUAAUCAGGAA   1   |*||=||*||||||||||||* targets:494   UGAAGGAACAAAUUAGUCCUG   514 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii protein disulfide-isomerase-like (LOC105797163), mRNA	protein disulfide-isomerase-like(LOC105797163)	coding protein	psRNATarget