Search result

BaseInfo

ncRNA ID novel_gra_miR66
Species Gossypium raimondii
Class miRNA
Genome position Chr1:38036935-38037148 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 191 - CUAAAGCUCUGAGCAUUAGCAGCG - 214
Stem-loop(if miRNA) --      C  U          A        CC                CUC               C     CA    -   G  -U      CCGAA     AAAA    A
  CUAAAG UC GAGCAUUAGC GCGCUUUU  AAAAACGUCGCUAAAG   UGAGCAUUAGCGGCG UUUUU  AAAA CGC GC  AAAGCC     AGGUC    AACG U
  |||||| || |||||||||| ||||||||  ||||||||||||||||   ||||||||||||||| |||||  |||| ||| ||  ||||||     |||||    ||||
  GAUUUC AG CUCGUAAUCG CGCGAAAA  UUUUUGCGGCGAUUUU   ACUCGUAAUUGCUGC AAGAA  UUUU GCG CG  UUUUGG     UUCGG    UUGC G
GC      U  -          C        AC                --U               A     UC    C   G  UU      ----A     ---G    U
Stem-loop sequence CUAAAGCUCUGAGCAUUAGCAGCGCUUUUCCAAAAACGUCGCUAAAGCUCUGAGCAUUAGCGGCGCUUUUUCAAAAACGCGGCUAAAGCCCCGAAAGGUCAAAAAACGAUGUCGUUGGGCUUAGGUUUUUUGCGGCGCUUUUCUAAGAAACGUCGUUAAUGCUCAUUUUUAGCGGCGUUUUUCAAAAAGCGCCGCUAAUGCUCGAUCUUUAGCG