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BaseInfo

ncRNA ID	novel_gra_miR59
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:53782602-53782765 [-]
Reference genome	Graimondii2_0
Source	SRR616255
Length	24
Mature sequence(if miRNA)	141 - GAGAAGGCGAAAUGCAAUCUGACU - 164
Stem-loop(if miRNA)	--   AA                          -CAG     C    A   UC      AU      CCC    AA  UUGAA   GAG  GGCGAAAUGCAAUCUGACUUCUAGUA    GAUCU CAUG UAC  UUAUCU  UCAACA   AUAU  AC     A   |||  ||||||||||||||||||||||||||    ||||| |||| |||  ||||||  ||||||   ||||  ||     A   CUC  UUGUUUUAUGUUAGGCUGAGGAUCAU    UUGGA GUAU AUG  AAUGGA  GGUUGU   UAUA  UG     G AU   CC                          CUUA     A    C   UA      --      ACC    CA  UUAAA
Stem-loop sequence	GAGAAGGCGAAAUGCAAUCUGACUUCUAGUACAGGAUCUCCAUGAUACUCUUAUCUAUUCAACACCCAUAUAAACUUGAAAAGAAAUUGUACAUAUCCAUGUUGGAGGUAAAUGUACUAUGAAGGUUAUUCUACUAGGAGUCGGAUUGUAUUUUGUUCCCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012628005.1	ncRNA:24   UC--AGUCUAACGUAAAGCGGAAGAG   1   ||--|=|||||||||||=|||||||| targets:1705   AGAUUUAGAUUGCAUUUUGCCUUCUC   1730 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X4, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget
XM_012628002.1	ncRNA:24   UC--AGUCUAACGUAAAGCGGAAGAG   1   ||--|=|||||||||||=|||||||| targets:1782   AGAUUUAGAUUGCAUUUUGCCUUCUC   1807 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105798092 (LOC105798092), transcript variant X1, mRNA	uncharacterized LOC105798092(LOC105798092)	coding protein	psRNATarget