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BaseInfo

ncRNA ID novel_gra_miR54
Species Gossypium raimondii
Class miRNA
Genome position Chr1:51810031-51810174 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - AAGGUCCUGGUCUUUAGUGGCGUU - 24
Stem-loop(if miRNA) -    U  -U GU              GUGUGAA              GU UU GU              GU
 AAGG CC  G  CUUUAGUGGCGUUU       AAGCGCCGCUAAAG  C  G  CUUUAGCGGCGUUU  G
 |||| ||  |  ||||||||||||||       ||||||||||||||  |  |  ||||||||||||||
 UUUC GG  C  GAAAUCGCCGCGAA       UUUGCGGCGAUUUC  G  C  GAAAUCGCCGCGAA  G
A    U  UU UG              AAGGGUG              UG UU UG              AG
Stem-loop sequence AAGGUCCUGGUCUUUAGUGGCGUUUGUGUGAAAAGCGCCGCUAAAGGUCUUGGUCUUUAGCGGCGUUUGUGGGAAAGCGCCGCUAAAGGUCUUGGUCUUUAGCGGCGUUUGUGGGAAAAGCGCCGCUAAAGGUCUUGGUCUUUA