Search result

BaseInfo

ncRNA ID	novel_gra_miR53
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr1:48792580-48792650 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	23
Mature sequence(if miRNA)	1 - AGCGGCGUUUGUAGGAAUGUGCC - 23
Stem-loop(if miRNA)	--            A    -U             UC   AGCGGCGUUUGU GGAA  GUGCCGCUAAAGG  A   |||||||||||| ||||  |||||||||||||   UCGCCGCAAACA CCUU  CGCGGCGAUUUCU  U AA            C    UU             GG
Stem-loop sequence	AGCGGCGUUUGUAGGAAUGUGCCGCUAAAGGUCAUGGUCUUUAGCGGCGCUUUUCCCACAAACGCCGCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012588315.1	ncRNA:23   CCGUGUAAGGAUGUUUGCGGCGA   1   |||=|*||||*|||||||||||| targets:1189   GGCGCUUUCCCACAAACGCCGCU   1211 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X3, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588314.1	ncRNA:23   CCGUGUAAGGAUGUUUGCGGCGA   1   |||=|*||||*|||||||||||| targets:1375   GGCGCUUUCCCACAAACGCCGCU   1397 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X2, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588313.1	ncRNA:23   CCGUGUAAGGAUGUUUGCGGCGA   1   |||=|*||||*|||||||||||| targets:1459   GGCGCUUUCCCACAAACGCCGCU   1481 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X1, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588306.1	ncRNA:23   CCGUGUAAGGAUGUUUGCGGCGA   1   |||=|*||||*|||||||||||| targets:5417   GGCGCUUUCCCACAAACGCCGCU   5439 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable disease resistance protein At4g27220 (LOC105768404), mRNA	probable disease resistance protein At4g27220(LOC105768404)	coding protein	psRNATarget