ncRNA ID | novel_gra_miR52 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr1:48440881-48441039 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255;SRR616257 |
Length | 24 |
Mature sequence(if miRNA) | 136 - AAAGGUCAUGGUCUUUAGUGGCGU - 159 |
Stem-loop(if miRNA) |
--          GU    GU              G GG  A                C                   GU   GCCGCUAAAG  CAUG  CUUUAGCGGCGUUU U  UA AAGCGCCGCUAAAGAC AUGUUCUUUAGCGGCGUUU  G   ||||||||||  ||||  |||||||||||||| |  || |||||||||||||||| |||||||||||||||||||  G   CGGUGAUUUC  GUAC  GAAAUCGCCGCGAA A  GU UUUGCGGCGAUUUCUG UACAAGAAAUCGCCGCGAA  G UG          UG    UG              G GG  G                U                   AA |
Stem-loop sequence | GCCGCUAAAGGUCAUGGUCUUUAGCGGCGUUUGUGGUAAAAGCGCCGCUAAAGACCAUGUUCUUUAGCGGCGUUUGUGGGAAAAGCGCCGCUAAAGAACAUUGUCUUUAGCGGCGUUUGUGGGAGAAGCGCCGCUAAAGGUCAUGGUCUUUAGUGGCGU |