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BaseInfo

ncRNA ID novel_gra_miR49
Species Gossypium raimondii
Class miRNA
Genome position Chr13:15982409-15982562 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - AAUGCUCUGGGCUUUAGCGGCGUU - 24
Stem-loop(if miRNA) --U        U       U U              -      G   CA    U    G    U             U
   GCCGCUAA GCUCAGA C UUAGCGGUGUUUUU GGAAAA CGC  CUAA GCUC GGGC UUAGCGGCGUUUU U
   |||||||| ||||||| | |||||||||||||| |||||| |||  |||| |||| |||| |||||||||||||
   CGGCGAUU CGGGUCU G AAUCGCCGCGAAGA CCUUUU GCG  GAUU CGGG CUCG AAUCGCCGCGAAG A
UUG        U       C U              A      -   AC    U    G    U             A
Stem-loop sequence UGCCGCUAAUGCUCAGAUCUUUAGCGGUGUUUUUGGAAAAGCGCCACUAAUGCUCGGGGCUUUAGCGGCGUUUUUUAAGAAGCGCCGCUAAUGCUCGGGGCUUUAGCAGCGUUUUCCAAGAAGCGCCGCUAAUGCUCUGGGCUUUAGCGGCGUU