ncRNA ID | novel_gra_miR32 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr13:56229129-56229329 [-] |
Reference genome | Graimondii2_0 |
Source | SRR616255;SRR616256 |
Length | 24 |
Mature sequence(if miRNA) | 178 - AUGAAACUGUGAUUCCAUGUCAUC - 201 |
Stem-loop(if miRNA) |
--      C       C         C                            A C        UU     UA        C    UUAGUUGGAUUUG   AUGAAA UGUGAUU CAUGUCAUC UUAUCCCUUUUCAAUAGGAGUAUGACAA U AGAUUUUU  UCUCC  AUUUUUAG AUCU             A   |||||| ||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||||  |||||  |||||||| ||||             A   UACUUU ACACUAA GUGCAGUAG GAUAGGGAAAGGUUAUUCUCGUACUGUU A UCUAAAAA  AGAGG  UAAAAGUC AAAA             U UA      C       A         C                            A A        --     GC        A    AGGAGAACUUUUU |
Stem-loop sequence | AUGAAACUGUGAUUCCAUGUCAUCCUUAUCCCUUUUCAAUAGGAGUAUGACAAAUCAGAUUUUUUUUCUCCUAAUUUUUAGCAUCUUUAGUUGGAUUUGAAUUUUUUCAAGAGGAAAAAACUGAAAAUCGGGAGAAAAAAUCUAAAUUGUCAUGCUCUUAUUGGAAAGGGAUAGCGAUGACGUGAAAUCACACUUUCAUAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012613692.1 |
|
1.5 | PREDICTED: Gossypium raimondii probable WRKY transcription factor 9 (LOC105787323), mRNA | probable WRKY transcription factor 9(LOC105787323) | coding protein | psRNATarget |