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BaseInfo

ncRNA ID novel_gra_miR32
Species Gossypium raimondii
Class miRNA
Genome position Chr13:56229129-56229329 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616256
Length 24
Mature sequence(if miRNA) 178 - AUGAAACUGUGAUUCCAUGUCAUC - 201
Stem-loop(if miRNA) --      C       C         C                            A C        UU     UA        C    UUAGUUGGAUUUG
  AUGAAA UGUGAUU CAUGUCAUC UUAUCCCUUUUCAAUAGGAGUAUGACAA U AGAUUUUU  UCUCC  AUUUUUAG AUCU             A
  |||||| ||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||||  |||||  |||||||| ||||             A
  UACUUU ACACUAA GUGCAGUAG GAUAGGGAAAGGUUAUUCUCGUACUGUU A UCUAAAAA  AGAGG  UAAAAGUC AAAA             U
UA      C       A         C                            A A        --     GC        A    AGGAGAACUUUUU
Stem-loop sequence AUGAAACUGUGAUUCCAUGUCAUCCUUAUCCCUUUUCAAUAGGAGUAUGACAAAUCAGAUUUUUUUUCUCCUAAUUUUUAGCAUCUUUAGUUGGAUUUGAAUUUUUUCAAGAGGAAAAAACUGAAAAUCGGGAGAAAAAAUCUAAAUUGUCAUGCUCUUAUUGGAAAGGGAUAGCGAUGACGUGAAAUCACACUUUCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012613692.1
ncRNA:24   CUACUGUACCUUAGUGUCAAAGUA   1
  *||||||||||||||||||||=||
targets:1701   AAUGACAUGGAAUCACAGUUUUAU   1724

1.5 PREDICTED: Gossypium raimondii probable WRKY transcription factor 9 (LOC105787323), mRNA probable WRKY transcription factor 9(LOC105787323) coding protein psRNATarget