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BaseInfo

ncRNA ID	novel_gra_miR31
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr13:56876672-56876832 [-]
Reference genome	Graimondii2_0
Source	SRR616255
Length	24
Mature sequence(if miRNA)	1 - AUUGGAAAGGGAUAAGGAUGACGU - 24
Stem-loop(if miRNA)	--       C                A      U         A                -   UUUUCCUACUAAAAAAU   GUCAUCC UAUCUCUUUCUAAUAG AGAAUG CAAAUCAGA UUUUCUUCCUGAUUUC AGU                 U   ||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||| |||   CAGUAGG AUAGGGAAAGGUUAUC UCUUAC GUUUAGUCU AAAAGGAGGACUAAAG UCG                 C UG       A                C      U         A                A   UAAAAAAACAACUUAAA
Stem-loop sequence	GUCAUCCCUAUCUCUUUCUAAUAGAAGAAUGUCAAAUCAGAAUUUUCUUCCUGAUUUCAGUUUUUCCUACUAAAAAAUUCAAAUUCAACAAAAAAAUGCUAGAAAUCAGGAGGAAAAAUCUGAUUUGUCAUUCUCCUAUUGGAAAGGGAUAAGGAUGACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012635623.1	ncRNA:24   UGCAGUAGGAAUAGGGAAAGGUUA   1   ||*|||||||||||=||||||||| targets:1562   ACAUCAUCCUUAUCUCUUUCCAAU   1585 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii F-box protein At3g07870-like (LOC105803433), mRNA	F-box protein At3g07870-like(LOC105803433)	coding protein	psRNATarget
XM_012599901.1	ncRNA:24   UGCAGUAGGAAUAGGGAAAGGUUA   1   |||--|||*|||||*||||||||| targets:1639   ACG--AUCAUUAUCACUUUCCAAU   1660 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein STICHEL (LOC105776932), transcript variant X1, mRNA	protein STICHEL(LOC105776932)	coding protein	psRNATarget
XM_012599903.1	ncRNA:24   UGCAGUAGGAAUAGGGAAAGGUUA   1   |||--|||*|||||*||||||||| targets:1639   ACG--AUCAUUAUCACUUUCCAAU   1660 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein STICHEL (LOC105776932), transcript variant X3, mRNA	protein STICHEL(LOC105776932)	coding protein	psRNATarget
XM_012599902.1	ncRNA:24   UGCAGUAGGAAUAGGGAAAGGUUA   1   |||--|||*|||||*||||||||| targets:1087   ACG--AUCAUUAUCACUUUCCAAU   1108 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii protein STICHEL (LOC105776932), transcript variant X2, mRNA	protein STICHEL(LOC105776932)	coding protein	psRNATarget