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BaseInfo

ncRNA ID novel_gra_miR26
Species Gossypium raimondii
Class miRNA
Genome position Chr13:45286333-45286470 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 1 - ACCAAAACGCAUCGUUCUGGGUUG - 24
Stem-loop(if miRNA) ---A        C  -    CUG         A     GAAUUAG        AAGAAAAAA         C C
    CCAAAACG AU CGUU   GGUUGAGGU UUUUA       UGGCGCUU         CGCUGCUAA G A
    |||||||| || ||||   ||||||||| |||||       ||||||||         ||||||||| | C
    GGUUUUGC UA GCAA   CCAAUUCUA AAAAU       GCCGCGAA         GCGGCGAUU C A
GUUG        -  C    -AA         A     -------        ACAUACUAC         A C
Stem-loop sequence ACCAAAACGCAUCGUUCUGGGUUGAGGUAUUUUAGAAUUAGUGGCGCUUAAGAAAAAACGCUGCUAACGCACACCAUUAGCGGCGCAUCAUACAAAGCGCCGUAAAAAAUCUUAACCAAAACGCAUCGUUUUGGGUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012621017.1
ncRNA:24   GUUGGGUCUUGCUACGCAAAACCA   1
  ***==|=|||||*|||||||||||
targets:5   GUUUUCGGAACGCUGCGUUUUGGU   28

2.5 PREDICTED: Gossypium raimondii translation machinery-associated protein 22-like (LOC105792407), mRNA translation machinery-associated protein 22-like(LOC105792407) coding protein psRNATarget