ncRNA ID | novel_gra_miR25 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr13:44352321-44352455 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 112 - AUACUGAUACCUGCUAUUGACACG - 135 |
Stem-loop(if miRNA) |
--      A  A                       -U           -----UU    U    G  U      UGUCAA AG AGGUAUCAGUAUACGAAAAAAGU  AAAAAAGUUUU       AGGU GGUG CC GCCC   |||||| || |||||||||||||||||||||||  |||||||||||       |||| |||| || |||A   ACAGUU UC UCCAUAGUCAUAUGCUUUUUUCA  UUUUUUUAGAG       UCCA CCAC GG CGGU GC      A  G                       UU           UGUUUUU    -    -  C    |
Stem-loop sequence | UGUCAAAAGAAGGUAUCAGUAUACGAAAAAAGUUAAAAAAGUUUUUUAGGUUGGUGGCCUGCCCAUGGCCGGCACCACCUUUUUUGUGAGAUUUUUUUUUACUUUUUUCGUAUACUGAUACCUGCUAUUGACACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012605070.1 |
|
2.5 | PREDICTED: Gossypium raimondii glucose-induced degradation protein 4 homolog (LOC105780635), transcript variant X3, mRNA | glucose-induced degradation protein 4 homolog(LOC105780635) | coding protein | psRNATarget |