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BaseInfo

ncRNA ID novel_gra_miR25
Species Gossypium raimondii
Class miRNA
Genome position Chr13:44352321-44352455 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 112 - AUACUGAUACCUGCUAUUGACACG - 135
Stem-loop(if miRNA) --      A  A                       -U           -----UU    U    G  U   
  UGUCAA AG AGGUAUCAGUAUACGAAAAAAGU  AAAAAAGUUUU       AGGU GGUG CC GCCC
  |||||| || |||||||||||||||||||||||  |||||||||||       |||| |||| || |||A
  ACAGUU UC UCCAUAGUCAUAUGCUUUUUUCA  UUUUUUUAGAG       UCCA CCAC GG CGGU
GC      A  G                       UU           UGUUUUU    -    -  C   
Stem-loop sequence UGUCAAAAGAAGGUAUCAGUAUACGAAAAAAGUUAAAAAAGUUUUUUAGGUUGGUGGCCUGCCCAUGGCCGGCACCACCUUUUUUGUGAGAUUUUUUUUUACUUUUUUCGUAUACUGAUACCUGCUAUUGACACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012605070.1
ncRNA:24   GCACAGUUAUCGUCCAUAGUCAUA   1
  **|**=|||||||||||||*||||
targets:667   GAUCCUAAUAGCAGGUAUCUGUAU   690

2.5 PREDICTED: Gossypium raimondii glucose-induced degradation protein 4 homolog (LOC105780635), transcript variant X3, mRNA glucose-induced degradation protein 4 homolog(LOC105780635) coding protein psRNATarget