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BaseInfo

ncRNA ID novel_gra_miR19
Species Gossypium raimondii
Class miRNA
Genome position Chr10:62150591-62150762 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 24
Mature sequence(if miRNA) 149 - AGGCCCUUGUAAUAAGAGUCGGAU - 172
Stem-loop(if miRNA) --    C    UAA              C     A C    C            A  UA     AU    ACACGUUAAAUUAAAGA
  AGGC CUUG   UAAGAGUCGGAUUG AUUUU C CCCU UACUUAAAAAAU GG  AAUUA  CUCU                 G
  |||| ||||   |||||||||||||| ||||| | |||| |||||||||||| ||  |||||  ||||
  UUUG GAAC   AUUUUCAGUCUAAC UAAAA G GGGA AUGAAUUUUUUA CC  UUAAU  AGGA                 C
CC    U    CUG              A     C A    A            -  UG     -C    ACAUGUUCCUAGUCAAA
Stem-loop sequence AGGCCCUUGUAAUAAGAGUCGGAUUGCAUUUUACCCCCUCUACUUAAAAAAUAGGUAAAUUAAUCUCUACACGUUAAAUUAAAGAGCAAACUGAUCCUUGUACAAGGACUAAUUGUCCAUUUUUUAAGUAAAGGGAGCAAAAUACAAUCUGACUUUUAGUCCAAGUGUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012595162.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||||||||||||||||||||||
targets:2126   AUCCGACUCUUAUUACAAGGGCCU   2149

0.0 PREDICTED: Gossypium raimondii MACPF domain-containing protein NSL1-like (LOC105773364), mRNA MACPF domain-containing protein NSL1-like(LOC105773364) coding protein psRNATarget
XM_012633992.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||||||=|||*|||||||||||
targets:1346   AUCCGACUUUUAGUACAAGGGCCU   1369

2.5 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X3, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633993.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||||||=|||*|||||||||||
targets:1398   AUCCGACUUUUAGUACAAGGGCCU   1421

2.5 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X4, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633989.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||||||=|||*|||||||||||
targets:1402   AUCCGACUUUUAGUACAAGGGCCU   1425

2.5 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X1, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012633990.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||||||=|||*|||||||||||
targets:1466   AUCCGACUUUUAGUACAAGGGCCU   1489

2.5 PREDICTED: Gossypium raimondii syntaxin-22-like (LOC105802387), transcript variant X2, mRNA syntaxin-22-like(LOC105802387) coding protein psRNATarget
XM_012612898.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  |||=*=||||||*|||||||||||
targets:532   AUCUUGCUCUUAGUACAAGGGCCU   555

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105786453 (LOC105786453), transcript variant X1, mRNA uncharacterized LOC105786453(LOC105786453) coding protein psRNATarget
XM_012598537.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||==|||||*||*|||||||||||
targets:1276   AUUUGACUCCUACUACAAGGGCCU   1299

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105776074 (LOC105776074), mRNA uncharacterized LOC105776074(LOC105776074) coding protein psRNATarget
XM_012625335.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  ||||*||||*||*|||||||||||
targets:1895   AUCCAACUCCUAAUACAAGGGCCU   1918

2.5 PREDICTED: Gossypium raimondii auxin-binding protein ABP19a-like (LOC105795634), mRNA auxin-binding protein ABP19a-like(LOC105795634) coding protein psRNATarget
XM_012627937.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  |*|*|||||*||*|||||||||||
targets:1109   AGCGGACUCCUAGUACAAGGGCCU   1132

2.5 PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X4, mRNA SAL1 phosphatase-like(LOC105798049) coding protein psRNATarget
XM_012627934.1
ncRNA:24   UAGGCUGAGAAUAAUGUUCCCGGA   1
  |*|*|||||*||*|||||||||||
targets:1084   AGCGGACUCCUAGUACAAGGGCCU   1107

2.5 PREDICTED: Gossypium raimondii SAL1 phosphatase-like (LOC105798049), transcript variant X2, mRNA SAL1 phosphatase-like(LOC105798049) coding protein psRNATarget
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