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BaseInfo

ncRNA ID novel_gra_miR11
Species Gossypium raimondii
Class miRNA
Genome position Chr1:3455262-3455342 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 22
Mature sequence(if miRNA) 60 - GCUCACUUCUCUUUCUGUCAGC - 81
Stem-loop(if miRNA) --        -    -        A        CAU    AA
  UGACAGAA GAGA GUGAGCAC CAAAGGCA   GUAU  G
  |||||||| |||| |||||||| ||||||||   ||||
  ACUGUCUU CUCU CACUCGUG GUUUUCGU   CAUA  C
CG        U    U        C        -UU    CG
Stem-loop sequence UGACAGAAGAGAGUGAGCACACAAAGGCACAUGUAUAAGCGCAUACUUUGCUUUUGCGUGCUCACUUCUCUUUCUGUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012608676.1
ncRNA:22   CGACUGUCUUUCUCUUCACUCG   1
  **||||||||||||||||*|||
targets:1441   AAUGACAGAAAGAGAAGUAAGC   1462

1.5 PREDICTED: Gossypium raimondii nucleolar complex protein 3 homolog (LOC105783301), mRNA nucleolar complex protein 3 homolog(LOC105783301) coding protein psRNATarget