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BaseInfo

ncRNA ID	novel_gra_miR7
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:3740768-3740848 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616256
Length	21
Mature sequence(if miRNA)	1 - UUUUUGGUCGACAAAACGCUC - 21
Stem-loop(if miRNA)	--                  C   UAA    A C    CG   UUUUUGGUCGACAAAACG UCG   GAAA U AAAC  C   |||||||||||||||||| |||   |||| | ||||  U   AAAAACCAGCUGUUUUGU AGU   CUUU A UUUG  C AC                  U   UUA    C C    UC
Stem-loop sequence	UUUUUGGUCGACAAAACGCUCGUAAGAAAAUCAAACCGCUCCUGUUUCACUUUCAUUUGAUUGUUUUGUCGACCAAAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012635098.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:490   GAUUGUUUUGUCGACCAAAAA   510 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase UPL7-like (LOC105803099), transcript variant X4, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC105803099)	coding protein	psRNATarget
XM_012635097.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:439   GAUUGUUUUGUCGACCAAAAA   459 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase UPL7-like (LOC105803099), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC105803099)	coding protein	psRNATarget
XM_012635099.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:439   GAUUGUUUUGUCGACCAAAAA   459 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase UPL7-like (LOC105803099), transcript variant X5, mRNA	E3 ubiquitin-protein ligase UPL7-like(LOC105803099)	coding protein	psRNATarget
XM_012633804.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:254   GAUUGUUUUGUCGACCAAAAA   274 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii proteoglycan 4-like (LOC105802266), transcript variant X3, mRNA	proteoglycan 4-like(LOC105802266)	coding protein	psRNATarget
XM_012633803.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:254   GAUUGUUUUGUCGACCAAAAA   274 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii proteoglycan 4-like (LOC105802266), transcript variant X2, mRNA	proteoglycan 4-like(LOC105802266)	coding protein	psRNATarget
XM_012633802.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   ||*=||||||||||||||||| targets:254   GAUUGUUUUGUCGACCAAAAA   274 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii proteoglycan 4-like (LOC105802266), transcript variant X1, mRNA	proteoglycan 4-like(LOC105802266)	coding protein	psRNATarget
XM_012622123.1	ncRNA:21   CUCGCAAAACAGCUGGUUUUU   1   *||||*||*|||||||||||| targets:391   CAGCGGUUCGUCGACCAAAAA   411 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105793197 (LOC105793197), mRNA	uncharacterized LOC105793197(LOC105793197)	coding protein	psRNATarget