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BaseInfo

ncRNA ID novel_gra_miR2
Species Gossypium raimondii
Class miRNA
Genome position Chr1:14247924-14248037 [+]
Reference genome Graimondii2_0
Source SRR616255
Length 24
Mature sequence(if miRNA) 91 - ACGACUUCUGCAUGAUGUAGCAUC - 114
Stem-loop(if miRNA) UGAA    -      -GU  C          U      --   -GAA     GAGU  A
    CUAU UUAUGU   GG UCGUAUACUU GAUGUA  AAU    AGUUU    UC A
    |||| ||||||   || |||||||||| ||||||  |||    |||||    || A
    GAUG AGUACG   UC AGCAUAUGGA UUACAU  UUA    UCAAA    AG U
CUAC    U      UCU  -          -      AG   AAAG     GAAU  A
Stem-loop sequence UGAACUAUUUAUGUGUGGCUCGUAUACUUUGAUGUAAAUGAAAGUUUGAGUUCAAAUAGAUAAGAAACUGAAAAUUGAUACAUUAGGUAUACGACUUCUGCAUGAUGUAGCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012587064.1
ncRNA:24   CUACGAUGUAGUACGUCUUCAGCA   1
  |**||*|*|||||||||||||||*
targets:486   GCAGCAAGAUCAUGCAGAAGUCGA   509

3.0 PREDICTED: Gossypium raimondii transcription repressor OFP7-like (LOC105767511), mRNA transcription repressor OFP7-like(LOC105767511) coding protein psRNATarget