ncRNA ID | novel_gra_miR2 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr1:14247924-14248037 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 91 - ACGACUUCUGCAUGAUGUAGCAUC - 114 |
Stem-loop(if miRNA) |
UGAA    -      -GU  C          U      --   -GAA     GAGU  A     CUAU UUAUGU   GG UCGUAUACUU GAUGUA  AAU    AGUUU    UC A     |||| ||||||   || |||||||||| ||||||  |||    |||||    || A     GAUG AGUACG   UC AGCAUAUGGA UUACAU  UUA    UCAAA    AG U CUAC    U      UCU  -          -      AG   AAAG     GAAU  A |
Stem-loop sequence | UGAACUAUUUAUGUGUGGCUCGUAUACUUUGAUGUAAAUGAAAGUUUGAGUUCAAAUAGAUAAGAAACUGAAAAUUGAUACAUUAGGUAUACGACUUCUGCAUGAUGUAGCAUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012587064.1 |
|
3.0 | PREDICTED: Gossypium raimondii transcription repressor OFP7-like (LOC105767511), mRNA | transcription repressor OFP7-like(LOC105767511) | coding protein | psRNATarget |